Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151395g00001 CCATATCCAGATGCGGAGGTGATAGCACTGTCACCGAAGACGCTAATGGCGACGAACAGGTTCATCTGTGAAGTTTGCAACAAAGGATTCCAAAGAGAACAGAACTTGCAGCTCCATAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGAACCCTAACAAAGAGCCTAAAAGAAAGGTCTATCTCTGCCCTGAGCCTACATGCGTCCACCACCACCCTTCACGGGCCCTCGGCGACCTCACTGGCATCAAGAAACACTTCTCTCGCAAGCACGGCGAGAAGAAGTGGAAGTGCCATAAGTGTTCTAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACTCCAAGACTTGTGGTACCAAAGAGTACAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACACACAGAGCATTTTGTGATGCATTAGCACATGAAAGTGCATCAAGAAACCCTCCAAGTAATAACCTCAACCCTTTTGGAACTCTCTATTCCACAAACAACAACAACATCTTGAGCCTTGGAAATACTACTTCTTCCACTTTCATTGCCACCACTGCACCCAAATTTGAGCACTTCATATCACCACCACCACCATCACCATTCAATCACAACAACAATCATCATCATCACCAATCTGCATTATTATTTTCACCATCACCATCCCCTTTTTTCATGGAAGGATATCAACAACACCAACAAGAGCCCTTATTATTCTCATCAAATAATAGTAATAATAAGCAATTATTGCATGGTGGTGGTGGTGGCCTTGTGCAACTTCCTAATAACAACAACAACATGAACATGTTCAACCTCAGTTTCTTCCCAACCAATCACAACAATCATCATCATCAGCAAGTTGGGTCAGGTTTTTCATCTCCATCATCTTCTATCTTTGGAAACAATTCATCATCACTGCAACTTCAACAACAAGAGAACAATAATCAAAATAACAATGTGTGTTGTTCTCCACATATGTCTGCAACTGCATTGCTGCAGAAAGCTGCACAAATGGGTTCAACAACTTCAATAAACACCAACAACAACACAAGTAGCAGCAGTGCTTGTGCTTCCTCTCTGCTAAGAGCAATGGCCAATAATGATCATAATGATGACCAAAACGACAATCTCAGAGGATTGATGAACTCTCTGGCAAATGATGATGAAAACATATTTGGCAACAACGTGAAAGGGAATCAGAATAATCTTGGTGGTGTGTGCTTTGGAGGATCTGATATTGATGATAATAAGTTGACTTTAGATTTTCTTGGTGTTGGAGGAGTCATCACAAACCTCACTGGAATCACTTCTTTCAACCCTAATAAACCCTTTGGAAGCTCATCAACAATGCAATGA 1374 0.4287 PYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPNKEPKRKVYLCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCHKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAHESASRNPPSNNLNPFGTLYSTNNNNILSLGNTTSSTFIATTAPKFEHFISPPPPSPFNHNNNHHHHQSALLFSPSPSPFFMEGYQQHQQEPLLFSSNNSNNKQLLHGGGGGLVQLPNNNNNMNMFNLSFFPTNHNNHHHQQVGSGFSSPSSSIFGNNSSSLQLQQQENNNQNNNVCCSPHMSATALLQKAAQMGSTTSINTNNNTSSSSACASSLLRAMANNDHNDDQNDNLRGLMNSLANDDENIFGNNVKGNQNNLGGVCFGGSDIDDNKLTLDFLGVGGVITNLTGITSFNPNKPFGSSSTMQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151395g00001 457 SUPERFAMILY beta-beta-alpha zinc fingers 20 118 IPR036236 -
Stsc151395g00001 457 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Stsc151395g00001 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 43 IPR013087 -
Stsc151395g00001 457 SMART c2h2final6 63 93 IPR013087 -
Stsc151395g00001 457 SMART c2h2final6 98 118 IPR013087 -
Stsc151395g00001 457 SMART c2h2final6 21 43 IPR013087 -
Stsc151395g00001 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 442 IPR031140 -
Stsc151395g00001 457 FunFam protein indeterminate-domain 5, chloroplastic-like 76 155 - -
Stsc151395g00001 457 Pfam Zinc-finger double-stranded RNA-binding 21 43 IPR022755 -
Stsc151395g00001 457 Gene3D Classic Zinc Finger 63 146 - -
Stsc151395g00001 457 FunFam protein indeterminate-domain 12-like 1 69 - -
Stsc151395g00001 457 Gene3D Classic Zinc Finger 4 62 - -
Stsc151395g00001 457 MobiDBLite consensus disorder prediction 289 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151395g00001 Stsc-Chr151395 5658 9221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151395g00001 16 438 C2H2 Transcription Factor Family AT2G02080 49.210 5.18e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151395g00001 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151395g00001 K25870 - gmx:102663407 413.69