Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151391g00008 ATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGTATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGTGCATCAATCACATTTCTTGACACCCCCGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCCATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAGAGTAAAATTGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGCGATGTTCAGGCCATTGAAGTTTCAGCACTGCAAAAAACTGGACTGGATAACCTGGAAGAAGCTTTACTCCTTCAAGCTGAAATGATGGATCTTAAGGCACGAATTGATGGGTCTGCTCAAGCTTATGTTGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCTTTGATAACTACCATAGTAAAGGCAGGGACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGACGATTAACTCAACAAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTCGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTGCTGGTAGGACAAGGAAATTTGAGGAGAATAGACTTAGGAGGAAGTTGAATGAGGACACCCCATCTTCATTGGAATCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTCGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCCACTGCTCTTAGTCAGGCAGCTACTCGTGCCGGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACGCAGATAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAAGGAGCAAGTCAAAGGGACCTGATATTAAGATAGCTGGTTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACAGGAACCATGAGGCTTCTGAGAAGCGGGGAAGTCGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGACGCAGGATGTGGATACTGTGAAGAAGGGCAATGAGTGTGGATTAGTTATTAGTGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGTTGA 1545 0.4595 MGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQAIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGSAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMVGRLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSAGRTRKFEENRLRRKLNEDTPSSLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRAGIKLILHRVIYHLLEDIGNLIIEKAPGTFETQIAGQAEVLNIFEVKRSKSKGPDIKIAGCRVVEGFVARTGTMRLLRSGEVVFEGNCASLKRETQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151391g00008 514 CDD IF2_mtIF2_II 170 262 IPR044145 -
Stsc151391g00008 514 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 508 IPR015760 -
Stsc151391g00008 514 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 290 403 IPR036925 -
Stsc151391g00008 514 CDD mtIF2_IVc 403 492 - -
Stsc151391g00008 514 Gene3D - 1 165 IPR027417 -
Stsc151391g00008 514 Gene3D Translation factors 397 499 - -
Stsc151391g00008 514 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 163 IPR000795 GO:0003924|GO:0005525
Stsc151391g00008 514 Pfam Elongation factor Tu GTP binding domain 1 154 IPR000795 GO:0003924|GO:0005525
Stsc151391g00008 514 NCBIfam translation initiation factor IF-2 1 497 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151391g00008 514 Gene3D Translation factors 166 281 - -
Stsc151391g00008 514 Pfam Translation-initiation factor 2 277 385 IPR023115 -
Stsc151391g00008 514 SUPERFAMILY Translation proteins 167 249 IPR009000 -
Stsc151391g00008 514 FunFam Translation initiation factor IF-2 398 501 - -
Stsc151391g00008 514 FunFam Translation initiation factor IF-2 290 397 - -
Stsc151391g00008 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 162 IPR027417 -
Stsc151391g00008 514 Gene3D - 290 395 IPR036925 -
Stsc151391g00008 514 SUPERFAMILY Translation proteins 398 499 IPR009000 -
Stsc151391g00008 514 FunFam Translation initiation factor IF-2 1 165 - -
Stsc151391g00008 514 CDD IF2_eIF5B 1 160 - -
Stsc151391g00008 514 NCBIfam small GTP-binding protein domain 1 149 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151391g00008 Stsc-Chr151391 34106 36953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151391g00008 1 383 Eukaryotic Initiation Factors Gene Family AT1G21160 26.829 4.03e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151391g00008 K02519 - gmx:100790572 870.922