Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151391g00007 ATGACCCTTGTTGAACTAGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCATGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCAATGTTAAGAGGTTACATTCAGTTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTGACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGTATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGTGCATCAATCACATTTCTTGACACCCCCGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCCATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAGAGTAAAATTGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGCGATGTTCAGGCCATTGAAGTTTCAGCACTGCAAAAAACTGGACTGGATAACCTGGAAGAAGCTTTACTCCTTCAAGCTGAAATGATGGATCTTAAGGCACGAATTGATGGGTCTGCTCAAGCTTATGTTGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCTTTGATAACTACCATAGTAAAGGCAGGGACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGACGATTAACTCAACAAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTCGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTGCTGGTAGGACAAGGAAATTTGAGGAGAATAGACTTAGGAGGAAGTTGAATGAGGACACCCCATCTTCATTGGAATCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTCGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCCACTGCTCTTAGTCAGGCAGCTACTCGTGCCGGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACGCAGATAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAAGGAGCAAGTCAAAGGGACCTGATATTAAGATAGCTGGTTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACAGGAACCATGAGGCTTCTGAGAAGCGGGGAAGTCGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGACGCAGGATGTGGATACTGTGAAGAAGGGCAATGAGTGTGGATTAGTTATTAGTGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGTTGA 1758 0.4562 MTLVELAKRTGKSVSSLHDILTNVGEKVESEFEPLSMDIAELAAMEVGVNVKRLHSVEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQAIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGSAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMVGRLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSAGRTRKFEENRLRRKLNEDTPSSLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRAGIKLILHRVIYHLLEDIGNLIIEKAPGTFETQIAGQAEVLNIFEVKRSKSKGPDIKIAGCRVVEGFVARTGTMRLLRSGEVVFEGNCASLKRETQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151391g00007 585 FunFam Translation initiation factor IF-2 61 236 - -
Stsc151391g00007 585 NCBIfam small GTP-binding protein domain 67 220 IPR005225 GO:0005525
Stsc151391g00007 585 FunFam Translation initiation factor IF-2 361 468 - -
Stsc151391g00007 585 Gene3D - 361 466 IPR036925 -
Stsc151391g00007 585 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 234 IPR000795 GO:0003924|GO:0005525
Stsc151391g00007 585 Gene3D Translation factors 468 570 - -
Stsc151391g00007 585 Gene3D Translation factors 237 352 - -
Stsc151391g00007 585 CDD IF2_eIF5B 67 231 - -
Stsc151391g00007 585 CDD IF2_mtIF2_II 241 333 IPR044145 -
Stsc151391g00007 585 Gene3D - 61 236 IPR027417 -
Stsc151391g00007 585 SUPERFAMILY Translation proteins 469 570 IPR009000 -
Stsc151391g00007 585 CDD mtIF2_IVc 474 563 - -
Stsc151391g00007 585 FunFam Translation initiation factor IF-2 469 572 - -
Stsc151391g00007 585 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 5 579 IPR015760 -
Stsc151391g00007 585 NCBIfam translation initiation factor IF-2 2 568 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151391g00007 585 Pfam Elongation factor Tu GTP binding domain 69 225 IPR000795 GO:0003924|GO:0005525
Stsc151391g00007 585 SUPERFAMILY Translation proteins 238 320 IPR009000 -
Stsc151391g00007 585 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 361 474 IPR036925 -
Stsc151391g00007 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 233 IPR027417 -
Stsc151391g00007 585 Hamap Translation initiation factor IF-2 [infB]. 2 571 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151391g00007 585 Pfam Translation-initiation factor 2 348 456 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151391g00007 Stsc-Chr151391 34106 36953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151391g00007 55 549 Eukaryotic Initiation Factors Gene Family AT1G76810 27.128 1.77e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151391g00007 K02519 - gmx:100790572 980.319