Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151391g00006 ATGGCTTGGCTGGGGCTTGGAAGGAAGAGAATTTATATGAATATTTCTAGAGCTTTGAATAAATCTTCATTTAGGCGTGTGGCAGGGTCAAGCAATGGATCTATTTATACTGCACAATCTGTTTATGCATCAGCAAGATGCATGCCAGACCTTATCAACCACTCATCTGTGGGAGTGGCTGGTTTTTTCATTGGGACTAAAGGTGATATTCGGTGCTTCCATGCTAGTCCAGAAGTCTGGGCAAGAAGAGGCGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTGAGAAAGGAAGGTAGAAACCAGCCACCTGTTGAAGCTCGATACGTTCCTCGTAATGTCAAAGCACCCAAATCTAATCGTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTAGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCATGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCAATGTTAAGAGGTTACATTCAGTTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTGACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGTATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGTGCATCAATCACATTTCTTGACACCCCCGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCCATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAGAGTAAAATTGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGCGATGTTCAGGCCATTGAAGTTTCAGCACTGCAAAAAACTGGACTGGATAACCTGGAAGAAGCTTTACTCCTTCAAGCTGAAATGATGGATCTTAAGGCACGAATTGATGGGTCTGCTCAAGCTTATGTTGTAGAAGCAAGGCTTGACAAAGGACGCGGTCCTTTGATAACTACCATAGTAAAGGCAGGGACCTTAACTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGACGATTAACTCAACAAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTCGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTGCTGGTAGGACAAGGAAATTTGAGGAGAATAGACTTAGGAGGAAGTTGAATGAGGACACCCCATCTTCATTGGAATCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTCGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCCACTGCTCTTAGTCAGGCAGCTACTCGTGCCGGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCCCCTGGTACTTTTGAGACGCAGATAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAAGGAGCAAGTCAAAGGGACCTGATATTAAGATAGCTGGTTGTCGGGTTGTAGAAGGTTTTGTGGCAAGGACAGGAACCATGAGGCTTCTGAGAAGCGGGGAAGTCGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGACGCAGGATGTGGATACTGTGAAGAAGGGCAATGAGTGTGGATTAGTTATTAGTGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGTTGA 2160 0.4523 MAWLGLGRKRIYMNISRALNKSSFRRVAGSSNGSIYTAQSVYASARCMPDLINHSSVGVAGFFIGTKGDIRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPKSNRDKTVEIFEGMTLVELAKRTGKSVSSLHDILTNVGEKVESEFEPLSMDIAELAAMEVGVNVKRLHSVEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQAIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGSAQAYVVEARLDKGRGPLITTIVKAGTLTCGQHVVVGSEWGRIRAIKDMVGRLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSAGRTRKFEENRLRRKLNEDTPSSLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRAGIKLILHRVIYHLLEDIGNLIIEKAPGTFETQIAGQAEVLNIFEVKRSKSKGPDIKIAGCRVVEGFVARTGTMRLLRSGEVVFEGNCASLKRETQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151391g00006 719 CDD IF2_mtIF2_II 375 467 IPR044145 -
Stsc151391g00006 719 CDD IF2_eIF5B 201 365 - -
Stsc151391g00006 719 Gene3D Translation factors 602 704 - -
Stsc151391g00006 719 FunFam Translation initiation factor IF-2 495 602 - -
Stsc151391g00006 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Stsc151391g00006 719 CDD mtIF2_IVc 608 697 - -
Stsc151391g00006 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151391g00006 719 Pfam Elongation factor Tu GTP binding domain 203 359 IPR000795 GO:0003924|GO:0005525
Stsc151391g00006 719 NCBIfam small GTP-binding protein domain 201 354 IPR005225 GO:0005525
Stsc151391g00006 719 Gene3D - 195 370 IPR027417 -
Stsc151391g00006 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Stsc151391g00006 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 495 608 IPR036925 -
Stsc151391g00006 719 Pfam Translation-initiation factor 2 482 590 IPR023115 -
Stsc151391g00006 719 Gene3D - 496 600 IPR036925 -
Stsc151391g00006 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 93 713 IPR015760 -
Stsc151391g00006 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 367 IPR027417 -
Stsc151391g00006 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Stsc151391g00006 719 FunFam Translation initiation factor IF-2 195 370 - -
Stsc151391g00006 719 FunFam Translation initiation factor IF-2 603 706 - -
Stsc151391g00006 719 NCBIfam translation initiation factor IF-2 126 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc151391g00006 719 Gene3D Translation factors 371 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151391g00006 Stsc-Chr151391 34106 39029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151391g00006 189 683 Eukaryotic Initiation Factors Gene Family AT1G76810 27.128 1.23e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151391g00006 K02519 - gmx:100790572 1122.46