Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151390g00007 | ATGGCCTCAGATCAGCACTTCAGGGATGCTGCTCACCAAATTAATACCTTCCAAGACATACCCTCGTTACAGAAGTGGAAATCTTCCAGCAATGCCAATGCAGATTCCGGTCGAAACGCCAATGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTTCAAGAACCGGTAGTAACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAGACATGGAGCAGCAGAATCCGCAATGTCCCGTGTGCAAATCGGAAGTTTCTCAATCCTCCCTTGTTCCACTCTACGGCCGCACTCCGTCCCAGAAACATGCTCACCAATTAGGCTCTTCGATACCAAGAAGACCCCTCGGCCCGAGACCTGTCCTACAATCTACTTCTCAAAGTAATCAACCTCGACAACGATTCGACTCGATCCAAAGCAGTTACAGTTCACCGGTGCTAAGCACAATTGGTTCATCATCATTACATTCAACATCTGGGATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCAATTGACAAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGTAACCCAAGGATCAGAAGGCAGTTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTAGTTATGTGTCTTCTCTTGTTCTGA | 711 | 0.4487 | MASDQHFRDAAHQINTFQDIPSLQKWKSSSNANADSGRNANEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKDMEQQNPQCPVCKSEVSQSSLVPLYGRTPSQKHAHQLGSSIPRRPLGPRPVLQSTSQSNQPRQRFDSIQSSYSSPVLSTIGSSSLHSTSGIFGEMIYARVFGNQLTNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151390g00007 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 6 | 234 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Stsc151390g00007 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 61 | 70 | IPR017907 | - | |
Stsc151390g00007 | 236 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
Stsc151390g00007 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 95 | IPR001841 | - | |
Stsc151390g00007 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 146 | IPR013083 | - | |
Stsc151390g00007 | 236 | SMART | ring_2 | 46 | 94 | IPR001841 | - | |
Stsc151390g00007 | 236 | Pfam | RING-type zinc-finger | 46 | 92 | IPR027370 | - | |
Stsc151390g00007 | 236 | SUPERFAMILY | RING/U-box | 39 | 101 | - | - | |
Stsc151390g00007 | 236 | MobiDBLite | consensus disorder prediction | 112 | 147 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151390g00007 | Stsc-Chr151390 | 39737 | 42785 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151390g00007 | 34 | 236 | C3H Transcription Factor Family | AT4G28270 | 41.905 | 2.03e-47 | 154 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151390g00007 | K10666 | - | gmx:100785491 | 265.388 |