Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151390g00007 ATGGCCTCAGATCAGCACTTCAGGGATGCTGCTCACCAAATTAATACCTTCCAAGACATACCCTCGTTACAGAAGTGGAAATCTTCCAGCAATGCCAATGCAGATTCCGGTCGAAACGCCAATGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTTCAAGAACCGGTAGTAACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAGACATGGAGCAGCAGAATCCGCAATGTCCCGTGTGCAAATCGGAAGTTTCTCAATCCTCCCTTGTTCCACTCTACGGCCGCACTCCGTCCCAGAAACATGCTCACCAATTAGGCTCTTCGATACCAAGAAGACCCCTCGGCCCGAGACCTGTCCTACAATCTACTTCTCAAAGTAATCAACCTCGACAACGATTCGACTCGATCCAAAGCAGTTACAGTTCACCGGTGCTAAGCACAATTGGTTCATCATCATTACATTCAACATCTGGGATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCAATTGACAAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGTAACCCAAGGATCAGAAGGCAGTTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTAGTTATGTGTCTTCTCTTGTTCTGA 711 0.4487 MASDQHFRDAAHQINTFQDIPSLQKWKSSSNANADSGRNANEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKDMEQQNPQCPVCKSEVSQSSLVPLYGRTPSQKHAHQLGSSIPRRPLGPRPVLQSTSQSNQPRQRFDSIQSSYSSPVLSTIGSSSLHSTSGIFGEMIYARVFGNQLTNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151390g00007 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc151390g00007 236 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Stsc151390g00007 236 MobiDBLite consensus disorder prediction 132 147 - -
Stsc151390g00007 236 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Stsc151390g00007 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 146 IPR013083 -
Stsc151390g00007 236 SMART ring_2 46 94 IPR001841 -
Stsc151390g00007 236 Pfam RING-type zinc-finger 46 92 IPR027370 -
Stsc151390g00007 236 SUPERFAMILY RING/U-box 39 101 - -
Stsc151390g00007 236 MobiDBLite consensus disorder prediction 112 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151390g00007 Stsc-Chr151390 39737 42785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151390g00007 34 236 C3H Transcription Factor Family AT4G28270 41.905 2.03e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151390g00007 K10666 - gmx:100785491 265.388