Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151388g00003 ATGGAAGGTCACAGTGATGATGATGATGAGTACAGAAGGAAGGCGAAGATCGCAGTGGTGGCGATGGTGGTTCTGGCTTCTATAGCAGTCTTTGCTCTCTTTCTTGCATTTGCTTACTACTGCTACATTCGCCGCAAGGTCTTCATGCGCCGCAACGCCCAAAAAGCTGAAGATGCTAACCTTTGTGAGAAAAGTGACTTTGCAAATTTGCAAGTTGTTGCTGAGAAGGGAGTGAAGGTTTTCACATTCAAGCAGCTACATTCTGCAACAGGTGGCTTTAGCAAGTCCAATGTGATTGGCCATGGTGGTTTTGGCCTTGTTTACCGGGGGGTGCTTAGTGATGGCAGGAAAGTTGCCATTAAATTCATGGATCAGGCTGGAAAGCAAGGGGAAGAAGAATTTAAAGTAGAGGTGGAGTTGCTTAGCCGGTTGCATTCTCCGTATTTGCTAGCATTGCTCGGGTACTGCTCCGATAATAATCATAAACTGCTGGTGTACGAGTTCATGGCGAATGGTGGTTTGCAGGAACATCTTTATCCTGTCAGCAATTCTATTGTTATGCCTGTGCAATTGGATTGGGAAACTCGATTAAGCATAGCACTTGATGCTGCTAAAGGCTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTGATTCACAGAGATTTCAAGAGCAGCAATATCCTCTTGGATAGAAAATTCCATGCAAAAGTTTCTGATTTTGGGTTGGCCAAGCTTGGACCTGATAGAGCCGGTGGACATGTTTCGACTCGTGTTTTAGGCACCCAAGGATATGTTGCTCCTGAATATGCACTAACAGGGCATTTAACAACAAAATAA 840 0.4476 MEGHSDDDDEYRRKAKIAVVAMVVLASIAVFALFLAFAYYCYIRRKVFMRRNAQKAEDANLCEKSDFANLQVVAEKGVKVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLSDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPVSNSIVMPVQLDWETRLSIALDAAKGLEYLHEHVSPPVIHRDFKSSNILLDRKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151388g00003 279 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Stsc151388g00003 279 ProSiteProfiles Protein kinase domain profile. 93 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151388g00003 279 Gene3D Phosphorylase Kinase; domain 1 52 168 - -
Stsc151388g00003 279 FunFam Serine/threonine-protein kinase PBS1 58 168 - -
Stsc151388g00003 279 FunFam Os07g0541700 protein 169 262 - -
Stsc151388g00003 279 Gene3D Transferase(Phosphotransferase) domain 1 169 279 - -
Stsc151388g00003 279 SUPERFAMILY Protein kinase-like (PK-like) 75 278 IPR011009 -
Stsc151388g00003 279 Pfam Protein kinase domain 94 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151388g00003 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Stsc151388g00003 279 PANTHER OS01G0750732 PROTEIN 14 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151388g00003 Stsc-Chr151388 7690 10069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151388g00003 6 279 Receptor kinase-like Gene Family AT3G58690 74.818 1.07e-149 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc151388g00003 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151388g00003 - - gmx:100804893 471.47