Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151387g00002 ATGAGTTCTTCAGTGACAGGGGCTGCTGGTGGATCTGGTGGTGCTAATGGTGGGAATGATGGAAAAAGTAACAATAATAACAAAGGAAAACGACCTGCCTACAAACGCCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGGTTGGGATTGAGCCAAAGCAAGTCAAGTTTTGGTTTCAGAATAAGAGAACTCAAATCAAGAATCAACATGAGCGAGCAGATAACAATGCTCTTCGGGTTGAGAACGAAAGGATACAAAACGAGAACCTGCTAATGAGAGAAGCACTTAACAATATACTTTGCCCTGGTTGTGGGGGCCCACCTTCCACTGATGAAGACCATGAACTCTACGTGCAGAAAATGGCTCTTGAAAATGCCCACCTTAAGGAACAGGCAAGTCAAAACTATTCCTCTCCTTCAATGGATCCCACTGAGATATATGATATTTATAAAAAAAATTTCTTCTATTTGATCCAAAATATTCATGAGAAAATATCAAACCTTCTTGCAAGGTACTTGGAGAATCAGGTGTTACACCCTGAAGAAATGGAGCAGCTAAACGCAATAATTCCAAACAACAACATCGACTTTGCTGCTGCTGCTGGTGGTGGATCATCATCAACAGCAGCACCACCACTATTATATGATTTCTCATCACTTGCAAATGGAACCTTGTTTAATCAATTACAACAAGGCAGCATCAATCATAATCATGATGCTGTTGCAGGCCCTTCTAATTTCTCACTCCTTCATCATCATCACAATAACTTTGTTCCAACATCACCAATTATTATTGGTGATAATAATAATCACAATAACAATAATCTGCAGCATCATCAGCAAGGTGTGAGAGGAGTAGTAATGGAGGGTGCAGTTGCCTCTGAGGTTGCGGCGACCGCCATGGATGAACTGCTTAGGCTTGTTCGGATCAATGAGCCATTCTGGATTGGTTCTGCTTTTGATGGGAAGCTTGTGCTTCACGGTGAAAGCTATGACAGGATGTTTCCGAGGGTTAATCAATTCAATGATGGGAACTCTCGTGTTGAATCTTCAAAGGAATCAGGGATTGTCAACATGACTGGGATTCAACTCGTTCATTTGTTTCTTGATTCGGAAAAATGGGTGAATGTTTTCCCAACAATTGTTACAAAAGCGCAGACACTTGAAGTCTTTGAATTTGGATTACCAGAAAGCCGAAGTGGAGCCCTACAATTGATGCATGAAGAGATTCACGGGTTTTCACCATTGGTGGCATCTCGTGAATTTCAATTCCTTCGATTCTGCAATCAACTGGAGCCTGGATTGTGGATCATAACAGATGTGTCTTTCGATTCGTTTCGAGACCACTCCTTTCGCCTTTCTCTTTCTCGCTCTCGCTCTTGGAAACGTCCTTCTGGATGCTTGATCCAAGAACTCCCCAACTCCGGTTCTTGCATGATTACTTGGATTGAACATGTGGAAGTGGATGATAAGATTCAGACGCACAGGCTTTATAGAGATCTTGTTAGTACAAATGCTGTATTTGGAGCGCAGAGATGGATTATGGAACTTCAAAGAATGTGCCACAGATCTTTTAGCTACGCTCTTGAAAATATACCTGATCAAGAATATGGTGGAGTGATAAATAGAATTGAAGGAAGGAGGAGTGTGATGAGAGTTTGTGAGAGGATGGTGAGGATATTTAGTGAGAATTTGAACATGAGTGGAAAGGTTGAGTTTCCAGAGTTGAGTATGGAGTACAACAGTGGGGTTAGGATAGCAGCAAGAAGATGCATAGAGAAAGGGCAACCAACTGGGACAATTGTGATGGCTGCAACTTCTGTTTGGCTACCACACCATTACCACACTGTCTTTCAATTCTTAACTGATGTCAACAAACGCACTCAGTGGGATGTTATGTCTTGCATATCTCCAGTCCACAAGATTGCACACATTTCCAATGGAATTCATCCTGGAAACAATATATCAATTATTCAGCCATTCATCCCAAGCGAGAACAATTCCATAATAATTCAAGAAAGCTTCATAGACTCAGTGGGATCATCTTACATAGTGTATGCTCCGACCGACTTCGAAGCCATCAACGTCGTCATTAATGGCGGCGACTCTTCTACTGTCCCTGTCCTTCCCTCAGGATTTGTTGTGTGCGGAGATGGCAGAGAATCAATGATGAGCAACAGCAGCATTGCACCATCCATTTTTGGAGGAGCAGCTGGTGGAAGCTTTAGCGATCAGCTACTTAGATCAGAAGGAGGCTCTCTGTTGACGGTGGCATTCCAGGTTCTGGTTAACAACATCACTTGTGGACCCAACCACGTGAGTATGGAATCTATGGCTTCTATTAATACCCTTATAACTTCAACCGTCCAGAAGATTAAGGCCACATTGAATTGCAATGCCTTATAA 2463 0.4227 MSSSVTGAAGGSGGANGGNDGKSNNNNKGKRPAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIKNQHERADNNALRVENERIQNENLLMREALNNILCPGCGGPPSTDEDHELYVQKMALENAHLKEQASQNYSSPSMDPTEIYDIYKKNFFYLIQNIHEKISNLLARYLENQVLHPEEMEQLNAIIPNNNIDFAAAAGGGSSSTAAPPLLYDFSSLANGTLFNQLQQGSINHNHDAVAGPSNFSLLHHHHNNFVPTSPIIIGDNNNHNNNNLQHHQQGVRGVVMEGAVASEVAATAMDELLRLVRINEPFWIGSAFDGKLVLHGESYDRMFPRVNQFNDGNSRVESSKESGIVNMTGIQLVHLFLDSEKWVNVFPTIVTKAQTLEVFEFGLPESRSGALQLMHEEIHGFSPLVASREFQFLRFCNQLEPGLWIITDVSFDSFRDHSFRLSLSRSRSWKRPSGCLIQELPNSGSCMITWIEHVEVDDKIQTHRLYRDLVSTNAVFGAQRWIMELQRMCHRSFSYALENIPDQEYGGVINRIEGRRSVMRVCERMVRIFSENLNMSGKVEFPELSMEYNSGVRIAARRCIEKGQPTGTIVMAATSVWLPHHYHTVFQFLTDVNKRTQWDVMSCISPVHKIAHISNGIHPGNNISIIQPFIPSENNSIIIQESFIDSVGSSYIVYAPTDFEAINVVINGGDSSTVPVLPSGFVVCGDGRESMMSNSSIAPSIFGGAAGGSFSDQLLRSEGGSLLTVAFQVLVNNITCGPNHVSMESMASINTLITSTVQKIKATLNCNAL 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151387g00002 820 SUPERFAMILY Bet v1-like 312 541 - -
Stsc151387g00002 820 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Stsc151387g00002 820 SUPERFAMILY Bet v1-like 601 782 - -
Stsc151387g00002 820 CDD START_ArGLABRA2_like 310 540 - -
Stsc151387g00002 820 Gene3D - 348 530 IPR023393 -
Stsc151387g00002 820 SMART START_1 314 542 IPR002913 GO:0008289
Stsc151387g00002 820 FunFam Homeobox-leucine zipper protein HDG1 17 104 - -
Stsc151387g00002 820 ProSiteProfiles START domain profile. 305 545 IPR002913 GO:0008289
Stsc151387g00002 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 816 IPR042160 -
Stsc151387g00002 820 SUPERFAMILY Homeodomain-like 23 93 IPR009057 -
Stsc151387g00002 820 CDD homeodomain 28 89 IPR001356 GO:0003677
Stsc151387g00002 820 SMART HOX_1 30 92 IPR001356 GO:0003677
Stsc151387g00002 820 Pfam Homeodomain 34 86 IPR001356 GO:0003677
Stsc151387g00002 820 Pfam START domain 314 541 IPR002913 GO:0008289
Stsc151387g00002 820 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Stsc151387g00002 820 MobiDBLite consensus disorder prediction 17 32 - -
Stsc151387g00002 820 Gene3D - 18 104 - -
Stsc151387g00002 820 MobiDBLite consensus disorder prediction 1 35 - -
Stsc151387g00002 820 Coils Coil 82 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151387g00002 Stsc-Chr151387 10942 16512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151387g00002 30 816 Homeobox Transcription Factor Family AT1G73360 37.674 6.24e-168 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151387g00002 START 2.8e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151387g00002 K09338 - gmx:100795075 744.191