Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151383g00002 ATGGTGTCCACCTCTTCTTCTGCTTCAATCATCCCACCACCACGACCACCAAGATCATACAGCTATCACGTGTTCTTGAGTTTCAGAGGAGAAGACACTCACACTGGATTCACTAGCCATCTCTATGCTGCCCTCAACAGAAAGGGAATCACGACCTACAAAGATGACAAAAACCTTCGCAAAGGCGATGTTATTTCAGATAAACTTCTCAAATCAATTGAGGAGTCTATGTTTGCAGTCATAGTTCTCTCACCCAACTATGCTTCATCCACGTGGTGCTTGGGTGAGCTCTGCAAGATCCTTGACTGCAAGAACAACATGGGGCAACACATGGTGGCGGTGTTTTACGGTGTGGAGCCTTGTGACGTGAGGCACCAAATAGGAACATTTGAGGAAGCTTTCAAGAAACACGAACAGAGACATGAGAGTGAGAAGGCTAATAGATGGAGAGAAGCATTAACAAACGTTGCTGCTTGCTCTGGTTGGAGTTCCAAAAATAAGGACGAGGCAGCACTTGTGGAAAACATTGCTCAACATATATTCGAAATATTGATTCCCAAGTTGCCATCTTCAATGAAGAATCTTGTGGGGATTGATTCAAGAGTGCAACAAGTGATTAGTCTCATGGGTCTTGGGTTGAATCATGTTCGCTATATAGGCATATGGGGAATGGGCGGCATAGGTAAGACAACTATTGCTAGAGCAGTCTTTGAAACCATTCAAAGTAGATTTGAGGTTGCTTGCTTTCTTGCGAACGTAAGGGAGCAATCTGAGAAAAAAGATATTGTCCACATACAAAAACAACTTCTCAATCAAATGAACATAAGTTCAACTGATGTTTATTGCGACTATGATGGCACAAGAATAATTCAAAACTCTTTACGTCTCAAAAGGGTACTTCTTGTTCTTGATGATGTAAATGATGAAGAACAACTAGAGAATTTGGCTGGGGAAGAAGATTGGTTTGGTCCTGGGAGTAGAATAATAATCACAACTAGAGACACACATCTACTAGAGGAGCAAGGGGTGCATGAAACTTATGAGGTTGAAGGGTTAGTGAAAAGTGAAGCCTTTAACCTCTTTTGTTCGAAAGCTTTTAAACGACCAGAACCTACAGAAGGATTTTTGGATTTGTCCAAAGAAGTGGTCGAGTACAGTGGTGGTCTTCCATTGGCACTTAGAGTACTAGGTTCCCATCTTTTTGGTAGATCCATTAAGGTTTTGCACAGTGCTATCGAGGATATAAAGAATTCTTCACATTCTAAAATTATTGATGTACTGAAAATAAGCTATGACGGTTTAAGAGACAAGGAGAAGGACATTTTTCTAGATATTGCGTGTTTCTTTAACGGACGTGACAAAGGTGATGTTACAAAAATATTAGAAGGATGTGGTCATGATGCTGAAATTGGTATTGATATTTTGATTAACAAATCATTGGTCACTATAGATGAATATGATACTCTGAGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATGCAAGAATCTCCAAATGATGCTAGTAGGCGTAGCAGATTGTGGTGTTACAAGGACGTTGATTCTGTACTTACTCAAAAGAAGGAAATTGAAGCAACTACTCGTAGCATCGTTCTAGATAATATGGTCCTAGATATTGAAGGGAATTATACAGATTCTAACATAAGAGTTTTAGCTTTCTCAAATATATGCCAGCTAAAGCTTCTTATTTTAGATCACGTGCAAACTCCCATTCTCTGTGATATTCCTTGTACATTAAAGGTTTTGCACTGGAGACATTGTCCAATGGTAACTCTGCCATTTGCAGATCAACACTATGAACTTGTTGAAATTGATCTGTCTTATAGCGGAATTGTATCGTTATGGGATGGAAAGAAGTTTCTAAATAAGTTAGAGCATTTGAATTTGTCTGTCTCCAATCTGAAGCAAACACCAGATCTTTCCGGGGCTCCCAATCTTAAAACACTTCATCTTGAAGAATGTAGGGAGTTGAATTATATTCACCCGTCTCTAGCACACCATAAGAGCCTTGTTGAATTGAATTTAAGGGAATGTAGGAGTCTTGAAACACTCGAAGATAAATTGGAGATTAGCTCACTCAAAAAACTAGATCTATGCAATTGCACTAGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAAACAGTTACCGATTCTGACTTTGAGTCGTGTAAAATTAAATCTACCCAAGACGATTGTAAATTTGGTAGGCCTGTCTGAGGTGGACTTTGGCGACTGCGAGTTTACTGGTGTTTCCTTATCACTGGCTTTGCCAGAGCGTCCATCAAGTCTAAGAGAATTACAAGCACATCGTTGTGGTTCACTTGATGCATCCAATGTGAATGATGTTATATCAAAGGCATGCTGTGTTTTTGCAGAATCAGCTACCCAAGATCGTGAAGACTTCTTGCAAATGTTGATCCCCGGGAAGGAAATTCCAGGATGGTTTGAGCATCAGGAAGAAGATAACGGAGTTTCAGTCTCATTCTTGCATAATTGCCCTAATTCCACTGAAACTGTGGCACTTGCTCTCTGTTTCCAAATTAAATGTAACACGTTCTTTGACGAGAAGCCAACGGTGATATGCAACGGTAAAGAATTCATCAATTGTTCATTGAAGACATTCAACAGGAAGAGGAAGAGCGTGCTGCCACAATACTTACCTCTCTTCGCTTTGCTTCCCACAGCACTTGGTTCTCATAACTCATGCCAAAAGTTTCTAAATATATTACAGCTCCAAATTGCAGAGCCGGCTGGATATTTAACTTTCTCTCGCTCCTCATATATCACATGCTCTCTCAAGCTTAAAGAATGGATACCTGCCTTGCCTACACTGGTATACGATGATTTTTTGCAAATGATATTGGAGGTAGTCCATTGA 2913 0.4003 MVSTSSSASIIPPPRPPRSYSYHVFLSFRGEDTHTGFTSHLYAALNRKGITTYKDDKNLRKGDVISDKLLKSIEESMFAVIVLSPNYASSTWCLGELCKILDCKNNMGQHMVAVFYGVEPCDVRHQIGTFEEAFKKHEQRHESEKANRWREALTNVAACSGWSSKNKDEAALVENIAQHIFEILIPKLPSSMKNLVGIDSRVQQVISLMGLGLNHVRYIGIWGMGGIGKTTIARAVFETIQSRFEVACFLANVREQSEKKDIVHIQKQLLNQMNISSTDVYCDYDGTRIIQNSLRLKRVLLVLDDVNDEEQLENLAGEEDWFGPGSRIIITTRDTHLLEEQGVHETYEVEGLVKSEAFNLFCSKAFKRPEPTEGFLDLSKEVVEYSGGLPLALRVLGSHLFGRSIKVLHSAIEDIKNSSHSKIIDVLKISYDGLRDKEKDIFLDIACFFNGRDKGDVTKILEGCGHDAEIGIDILINKSLVTIDEYDTLRMHDLLEEMGKQIVMQESPNDASRRSRLWCYKDVDSVLTQKKEIEATTRSIVLDNMVLDIEGNYTDSNIRVLAFSNICQLKLLILDHVQTPILCDIPCTLKVLHWRHCPMVTLPFADQHYELVEIDLSYSGIVSLWDGKKFLNKLEHLNLSVSNLKQTPDLSGAPNLKTLHLEECRELNYIHPSLAHHKSLVELNLRECRSLETLEDKLEISSLKKLDLCNCTSLRRLPEFGECMKQLPILTLSRVKLNLPKTIVNLVGLSEVDFGDCEFTGVSLSLALPERPSSLRELQAHRCGSLDASNVNDVISKACCVFAESATQDREDFLQMLIPGKEIPGWFEHQEEDNGVSVSFLHNCPNSTETVALALCFQIKCNTFFDEKPTVICNGKEFINCSLKTFNRKRKSVLPQYLPLFALLPTALGSHNSCQKFLNILQLQIAEPAGYLTFSRSSYITCSLKLKEWIPALPTLVYDDFLQMILEVVH 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151383g00002 970 Pfam NB-ARC domain 218 432 IPR002182 GO:0043531
Stsc151383g00002 970 SUPERFAMILY L domain-like 559 787 - -
Stsc151383g00002 970 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 185 - -
Stsc151383g00002 970 Gene3D Ribonuclease Inhibitor 520 805 IPR032675 -
Stsc151383g00002 970 Gene3D - 352 435 IPR042197 -
Stsc151383g00002 970 Gene3D - 19 184 IPR035897 -
Stsc151383g00002 970 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 162 IPR035897 -
Stsc151383g00002 970 SUPERFAMILY "Winged helix" DNA-binding domain 421 527 IPR036390 -
Stsc151383g00002 970 Pfam TIR domain 22 196 IPR000157 GO:0007165
Stsc151383g00002 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 750 IPR044974 GO:0006952
Stsc151383g00002 970 Gene3D - 185 347 IPR027417 -
Stsc151383g00002 970 PRINTS Disease resistance protein signature 293 307 - -
Stsc151383g00002 970 PRINTS Disease resistance protein signature 386 400 - -
Stsc151383g00002 970 PRINTS Disease resistance protein signature 698 714 - -
Stsc151383g00002 970 PRINTS Disease resistance protein signature 218 233 - -
Stsc151383g00002 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Stsc151383g00002 970 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Stsc151383g00002 970 SMART till_3 21 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151383g00002 Stsc-Chr151383 6710 12832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151383g00002 12 754 WRKY Transcription Factor Family AT4G12020 30.406 1.05e-87 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151383g00002 - - adu:107485814 1014.6