Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151382g00006 ATGAACGAGAAGTTTTGTGTGAGTGATGAAGATAAGGGTGTGTTGGAATCTGTGTTGGGTGCAGAAGCTGTTGCATACTTTGTTTCTGCACTTTCCAAAAACATCTTCTCCAGTATGGTAGCTTCTGCTTCGGCTTTGGCTTCGGCCGGCTCTGATTCCGTCCTCCTGCGGCGGCTGTGCCAGGTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCCTGAAATCGGGTGGCTCCGCCTTGATTTGGGGCGATGGGCAATGCCGCGATCTCAAAGGGGGTGGATCTGGCGAGGGAGGATCCGAAGGGGACGGGAGTGGAGTTAGTAAGGGTGATGAAGAGGAGCTGAGAAAGAAAGTGCTCAAGAAGCTTGATGCATATTTTGCTTGCTCTGTGTCGAAAGAGGTGAATTATGCAAGGCTAGATAGGGTTTCGGATTTGCATATGTTTTACTTGGCCTCAATGCATTATATATTTGGTCTCGATTCGCCTTGTGGCCCCGGAAGTTCTTTCCAGTCTGGCAAATCAATTTGGGTTTCTGATGCTGCTAGCTGTTCAAACCAACTAGAATCAAGATCATTTCTGGGGAGGTCGGCTGGTCTTCAAACAGTTGTTTTCGTGCCTCTTAAAGCCGGAGTCGTTGAGCTTGGTTCCGTGGAAACAATGCCCGAAGACCAGGGTGTTTTGGATTTGATCAGGACAGCATTTGGTGAATCTAGTTCTGGACAGGCGAAGGCATTTCCGAAGATTTTTGGGCGTGAATTAAGCGTTGGTGGTGGGGATCCGAAATCTCAGTCAATAACCATTAGTTTCTCGCCCAAGGTGGAAGATGATTCTGGTTTCACTTCAGACTCTTTTGAAGTTCAAGCCCTAGCAGCAAACCATGGATATGGGAATCCTTCTAATGGAAGCGTGGGTGAAAATAACGAAGCGAAATTGTTCCCTCAAATGATTGGCGGAAATTACAATGCTCAAACAAGGGGTTCTGCGCTAGATCTTGGTAATGAAGACTCATCCTCGACTCATCTGGACGAGCGGAAGCCTCGAAAAAGAGGTAGAAAGCCTGCGAATGGAAGAGAGGAACCTCTGAATCATGTTGAAGCGGAGAGACAAAGGAGGGAGAAGCTTAACCAAAGGTTCTACGCCTTAAGAGCTGTTGTTCCGAATATATCTAAAATGGACAAGGCATCTCTACTTGGCGACGCGATTACCTATATCACTGATCTGCAGATGAAGATCAAGGTATTGGAAGCAGAGAAGAACATGAATAGCAACAATGAACCAACATTTCCTTTTTCGGATATAGATTTCCAAGCCAGAGAGGATGACACAGCAGTCGTGCGAGTAAGTTGCCCCTTGGATCTCCACCCAGTTTCCAAAGTCGTTAAGACATTCCAGGAGCATCAAATTATGGCTCCAGAGTCCAGTGTTTCAACATCAGAGGGAAAGATGATTCATACATTCTCCATAAGAACGCAGGGCAGCGAGGCTGCTGCAATACAGTTGAAGGAAAAGCTTGAAGCATCCCTATCCAAAAAGTGA 1557 0.4676 MNEKFCVSDEDKGVLESVLGAEAVAYFVSALSKNIFSSMVASASALASAGSDSVLLRRLCQVVEGSKWNYAVFWQVAGLKSGGSALIWGDGQCRDLKGGGSGEGGSEGDGSGVSKGDEEELRKKVLKKLDAYFACSVSKEVNYARLDRVSDLHMFYLASMHYIFGLDSPCGPGSSFQSGKSIWVSDAASCSNQLESRSFLGRSAGLQTVVFVPLKAGVVELGSVETMPEDQGVLDLIRTAFGESSSGQAKAFPKIFGRELSVGGGDPKSQSITISFSPKVEDDSGFTSDSFEVQALAANHGYGNPSNGSVGENNEAKLFPQMIGGNYNAQTRGSALDLGNEDSSSTHLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVLEAEKNMNSNNEPTFPFSDIDFQAREDDTAVVRVSCPLDLHPVSKVVKTFQEHQIMAPESSVSTSEGKMIHTFSIRTQGSEAAAIQLKEKLEASLSKK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151382g00006 518 Pfam Helix-loop-helix DNA-binding domain 369 415 IPR011598 GO:0046983
Stsc151382g00006 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 430 IPR036638 GO:0046983
Stsc151382g00006 518 Gene3D - 358 431 IPR036638 GO:0046983
Stsc151382g00006 518 SMART finulus 371 420 IPR011598 GO:0046983
Stsc151382g00006 518 MobiDBLite consensus disorder prediction 330 376 - -
Stsc151382g00006 518 MobiDBLite consensus disorder prediction 343 376 - -
Stsc151382g00006 518 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 57 241 IPR025610 -
Stsc151382g00006 518 PANTHER MYC 44 514 IPR045084 GO:0003700|GO:0006355
Stsc151382g00006 518 FunFam Transcription factor bHLH13 358 432 - -
Stsc151382g00006 518 CDD bHLH_AtAIB_like 362 425 - -
Stsc151382g00006 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 414 IPR011598 GO:0046983
Stsc151382g00006 518 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151382g00006 Stsc-Chr151382 19037 20976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151382g00006 1 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.500 9.34e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151382g00006 bHLH-MYC_N 3e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151382g00006 - - adu:107473437 884.404