Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151379g00007 ATGGATCGAACGCCGGCAGCGGCGGTGGGAGCTGGCGGAGTAGGGATGGAGTTGCCAATCATGCACGAAAGTGACCGCTACGATTTCGTCCGGGACATCGGCTCCGGGAATTTCGGCGTGGCGAGGCTCATGAGGGACAAGCTCACCAAGGAGCTTGTTGCTGTTAAGTACATCGAACGCGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATCATCAGGTTTAAAGAGGTCATTTTGACACCTACTCATCTGGCCATCGTAATGGAGTATGCATCTGGAGGAGAATTGTTCGAGCGAATCTGCAAAGCAGGGCGTTTTACTGAAGACGAGGCTCGGTTCTTCTTTCAACAGCTCATATCTGGGGTCAGCTATTGCCATGCAATGCAAGTATGTCACCGGGACTTGAAGTTGGAGAACACTTTGTTGGATGGAACTTCAGCCCTTCAGTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTCCATTCACAACCAAAGTCAACAGTGGGCACTCCAGCATATATTGCTCCAGAAGTATTGCTAAAGCAAGAGTATGATGGCAAGGTTGCGGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGAACCTAAAGACTTCAGGAAGACAATTCAGAGGGTTCTCAGTGTGCAGTACTCCATCCCTGACTTCGTTCAAGTATCTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCCGAGAGGATCACAATTCCTGAAATCTTGAAAAACGAATGGTTTTTGAAGAATCTTCCGGCAGAGTTGATTGGTGAAAAAATTATGAGTAATCAATTTGAAGAGCCGGATCAACCCATGCAGAGCATTGATGAGATCATGCAGATAATTTCAGAAGCTACGATACCACCAGCTGGGGCACATTCGTTAGATCAGTTTATGATGGATAACATCGATGTGGATGATGACATGGATGACTTGGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCTATATAA 1101 0.4523 MDRTPAAAVGAGGVGMELPIMHESDRYDFVRDIGSGNFGVARLMRDKLTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICKAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGTSALQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKVADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDFVQVSPECRHLISRIFVFDPAERITIPEILKNEWFLKNLPAELIGEKIMSNQFEEPDQPMQSIDEIMQIISEATIPPAGAHSLDQFMMDNIDVDDDMDDLDSDFELDVDSSGEIVYAI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151379g00007 366 FunFam Serine/threonine-protein kinase SRK2E 18 102 - -
Stsc151379g00007 366 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Stsc151379g00007 366 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Stsc151379g00007 366 FunFam Serine/threonine-protein kinase SRK2E 103 291 - -
Stsc151379g00007 366 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151379g00007 366 Pfam Protein kinase domain 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151379g00007 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Stsc151379g00007 366 Gene3D Transferase(Phosphotransferase) domain 1 103 291 - -
Stsc151379g00007 366 PANTHER SERINE/THREONINE KINASE 26 295 - -
Stsc151379g00007 366 ProSiteProfiles Protein kinase domain profile. 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151379g00007 366 Gene3D Phosphorylase Kinase; domain 1 6 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151379g00007 Stsc-Chr151379 35054 39147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151379g00007 26 287 CBL-interacting serine-threonine protein kinases AT5G25110 44.526 1.83e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc151379g00007 Pkinase 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151379g00007 K14498 - gmx:100783967 613.609