Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151379g00004 ATGGAGGTGAGCTTGGATTTGAGTCTGTCCTTTGTTCCAAAGAGCATATCAATGTTCCTAGGCGATGTTTCTGGGAACACAAAATCCTCTGACAAATTGGCCATGCTTGATGACTTCCTCAACCGATTGGAGGATGAGATGACAAAGATCAACGCCTTCAAACGTGAGCTTCCCCTTTGCATGCTCCTTGTCACCGATGCTATAACAAGGTTGAAGGAGGAAAAGCTTCGCTGTATGGCAACTCAAGATCCACAACCTCTCACCACTGAAGAAGCAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGATCCTTGACTAAGAAAAACTGGATGACTTCACTTCAGTTATGGAGCACTCAAACCAAATCGAGGTGTGAAGAAGATTGTTCTGTGCCAGAGAACCCAATTCAGAGAAGGGAGAACAAGAGCAGAAGTAGTGGAGGAGGAGGAAGAGATGCATTGTTGAATGGGAACTCAAAGGAGGTTTCAAAAGTTCCTAGCTTTAGTTTCATGACTACTAGTCCAACCCCTGAACTCAAAAGTAGCAATTCCAAGGCTAATTCTTCTTCTCTGCTCATGAGCCGTGTTGAGGTTCAAGCCCAACAACCTCAGAATCCTAGGAAACAAAGGCGATGCTGGTCTCCGGAGCTTCACCGGCGTTTCGTCAATGCACTCCAACAACTTGGGGGAGCACAAGTGGCCACTCCTAAGCAGATAAGGGAACTGATGCAGGTACAAGACCTAACAAATGATGAAGTCAAAAGTCATTTACAAAAGTACAGACTTCATGTTAGGAGACTCCCAGTTTCATCTTCAGGTGAGAATCATGGTAATAATAGTACAAATGATGATGATGAGGAGGAGGAGGATGGTGTATGGGCAGTGAAGAAAGATGAATGTGGAAAAGGGAACAACAATTCATCGTCACAATCAAAATCTGGTTCACCACAGGGTCCATTACTATTAGCAGGTTCTGTTAAGGGACTCTCAAGCATGGATGCAGATGATGAACACTCAGATTGCCGCAATTGGAAAGCTGCCATTCACCAACAACCACCACAATCTGATAATCACAGCCGCTAA 1101 0.4287 MEVSLDLSLSFVPKSISMFLGDVSGNTKSSDKLAMLDDFLNRLEDEMTKINAFKRELPLCMLLVTDAITRLKEEKLRCMATQDPQPLTTEEADNNNNNNNNNNNNNNNGSLTKKNWMTSLQLWSTQTKSRCEEDCSVPENPIQRRENKSRSSGGGGRDALLNGNSKEVSKVPSFSFMTTSPTPELKSSNSKANSSSLLMSRVEVQAQQPQNPRKQRRCWSPELHRRFVNALQQLGGAQVATPKQIRELMQVQDLTNDEVKSHLQKYRLHVRRLPVSSSGENHGNNSTNDDDEEEEDGVWAVKKDECGKGNNNSSSQSKSGSPQGPLLLAGSVKGLSSMDADDEHSDCRNWKAAIHQQPPQSDNHSR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 81 112 - -
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 132 152 - -
Stsc151379g00004 366 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 166 197 - -
Stsc151379g00004 366 FunFam Myb family transcription factor 213 271 - -
Stsc151379g00004 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 347 IPR044787 GO:0003700|GO:0006355
Stsc151379g00004 366 Coils Coil 36 56 - -
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 130 197 - -
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 270 366 - -
Stsc151379g00004 366 Gene3D - 213 270 - -
Stsc151379g00004 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 269 IPR006447 GO:0003677
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 307 324 - -
Stsc151379g00004 366 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Stsc151379g00004 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Stsc151379g00004 366 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151379g00004 Stsc-Chr151379 18554 20572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151379g00004 1 272 G2-like Transcription Factor Family AT2G03500 41.083 1.23e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151379g00004 Myb_DNA-binding 8.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151379g00004 - - gmx:100785723 333.569