Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151379g00001 ATGTCGTCGTCGAATTCACCGTGCGCGGCGTGCAAATTCTTGCGGCGGAAGTGTACGCAGGAGTGCGTTTTCGCGCCGTATTTCCCTCCGGACAACCCGCAGAGGTTCGCATACGTGCACAAGGTGTTCGGCGCCAGCAACGTCGCGAAGCTCTTGAACGAGCTGAACGCGGCGCAGAGAGACGACGCCGTGAAGTCGTTGGCGTACGAGGCGGAGGCGCGTCTCAGGGATCCTGTTTACGGTTGCGTGGGTCTCATATCGGTGTTGCAGCACAGGCTCCGGCAGATCCAGGCGGAGCTAACCAACGCCAAGAAGGAGCTCGCCACCTACATTGGCCCTCAGGCACTGCAGGGTGTTCCGACCACCGCCATTCTCCAGCATCATCACCATCCCTTTGCCTCACAGATGTTCCCTTACAACGGCGCCATGGCAGCTCCGCCAGCTGTTGCGGCAGTTACTCATGGCGGACAGTTGATGATTCGCGAAGCTCAGCCTACTGCTCCTCCTCCGCCGCCGCAGCAGCAGCAGATCTTGGATGCTCAGCAGCTGGCTGCTGCTGCGGTGGTGGTGAGGGATCAACAGGATATGTTCAGAGGGTACGATCAGCATCATCAACAGCAAGAGTTTCTGAGGTTTAATGGTGGAGGGTTTGATATGGGTTCGGTTTCTTCTGGTGGCGGTGGTGGATACAGCCAGGTTAGTGGCGGTGGCAGTGGTGGCGGTTCTGGCGATCAGTTGTCTCCTTCGTTGGCTTTGGGTTCTTTTGATAACCCATACCATATGCAGCAAGCAGGGGAAAGCCATCATCATGCTCATCATCTTCCTCTTGAGGCGCAGCTGCTTCTCCCACCGCAGCAGAAGCAGCAGCAACCGCAGTCACAGCACATTCCGGGCCACCACCACCAACAACCTTCCGAAAGCGAGGAATGTAGGAGTGTCGGTCCATCTTGTTAA 954 0.5744 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQAELTNAKKELATYIGPQALQGVPTTAILQHHHHPFASQMFPYNGAMAAPPAVAAVTHGGQLMIREAQPTAPPPPPQQQQILDAQQLAAAAVVVRDQQDMFRGYDQHHQQQEFLRFNGGGFDMGSVSSGGGGGYSQVSGGGSGGGSGDQLSPSLALGSFDNPYHMQQAGESHHHAHHLPLEAQLLLPPQQKQQQPQSQHIPGHHHQQPSESEECRSVGPSC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151379g00001 317 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 283 - -
Stsc151379g00001 317 MobiDBLite consensus disorder prediction 283 317 - -
Stsc151379g00001 317 MobiDBLite consensus disorder prediction 225 252 - -
Stsc151379g00001 317 MobiDBLite consensus disorder prediction 283 300 - -
Stsc151379g00001 317 Coils Coil 86 106 - -
Stsc151379g00001 317 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Stsc151379g00001 317 MobiDBLite consensus disorder prediction 223 271 - -
Stsc151379g00001 317 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151379g00001 Stsc-Chr151379 9062 11146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151379g00001 1 311 AS2 family AT5G66870 51.183 6.08e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc151379g00001 LOB 1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151379g00001 - - gmx:100816778 318.931