Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151375g00005 ATGCACCTGGAAATGAAAGATAGGCAACGGTGGAGATCCGAAGAAGATGCTTTATTGCGTGCTTATGTCAAACAGTATGGTCCCAGGGAATGGAATCTTGTCTCTCAGCGCATGAACCAACCTCTTAATAGAGATGCCAAGTCATGTCTAGAAAGGTGGAAGAACTACCTCAAGCCTGGAATTAAGAAAGGATCTCTCACCGAAGAAGAGCAGCGCCTCGTCATCAACCTCCAAGCAACACATGGGAACAAGTGGAAGAAAATTGCAGCCGAAATCCCCGGTCGAACCGCCAAGAGGTTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAGCAAAGAGAAGCTAAGGTAATTAGCAAGACAGTTGATCCAATCGACGATAGCAAGTACGAGCACATTCTAGAGAGTTTTGCAGAGAAGCTAGTGAAAGAGCGAGCTTCACCGTCGTCCTTCGCCATGGTTGCTGCCAGTGGTTCTTATCTGCATAATAATGATGCATCAGTCACCACACCAGCTTTGCTTCCTTCTTGGCTCTCAAATTCGAATAGCACCACAACCGTGAGGCCACCACCATCCCCTTCTGTGACATTAAGTCTTTCTTCCTCGACTGTGGCTGCTGCACCTCCTCCATGGTTGCAACCAGCAAGAGGACCCGAGAACGCGCCTCTAGTCTTGGGGAATGTAGCAGTAGCATGTCATGGATCAGTTGTAGCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGGAGAAGTGCATCATGCTTTGGCAGGGCATAAGAAGGAGGCGGCTTGGCGGTTAAGTAGGGTGGAGCTGCAGTTAGAGTCGGAGAAAGCGTGTCGAAGAAGGGAGAAGATGGAGGAAATCGAGTCGAAGATTAAGGCTCTCAGGGAAGAGCAGGCAACTGCATTGGACAGGATTGAAGCTGAGTACAAGGAGCAGTTGGCTGGGTTGAGAAGAGATGCGGAAGCCAAGGAGCAGAAGTTGGCTGAGCAGTTCGCGGCGAAACACTTGCGCATCACCAAGTTTCTAGAACAAATGGGATGCAGGTCCAGGCTTGCTGAGACAAATGGAAGATAG 1074 0.4963 MHLEMKDRQRWRSEEDALLRAYVKQYGPREWNLVSQRMNQPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAEIPGRTAKRLGKWWEVFKEKQQREAKVISKTVDPIDDSKYEHILESFAEKLVKERASPSSFAMVAASGSYLHNNDASVTTPALLPSWLSNSNSTTTVRPPPSPSVTLSLSSSTVAAAPPPWLQPARGPENAPLVLGNVAVACHGSVVAELVECCKELGEVHHALAGHKKEAAWRLSRVELQLESEKACRRREKMEEIESKIKALREEQATALDRIEAEYKEQLAGLRRDAEAKEQKLAEQFAAKHLRITKFLEQMGCRSRLAETNGR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151375g00005 357 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Stsc151375g00005 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
Stsc151375g00005 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 353 - -
Stsc151375g00005 357 SUPERFAMILY Homeodomain-like 8 102 IPR009057 -
Stsc151375g00005 357 Coils Coil 284 330 - -
Stsc151375g00005 357 SMART sant 7 59 IPR001005 -
Stsc151375g00005 357 SMART sant 62 110 IPR001005 -
Stsc151375g00005 357 FunFam MYB-related transcription factor 8 62 - -
Stsc151375g00005 357 Pfam Myb-like DNA-binding domain 11 71 - -
Stsc151375g00005 357 CDD SANT 10 57 IPR001005 -
Stsc151375g00005 357 Gene3D - 66 128 - -
Stsc151375g00005 357 CDD SANT 67 108 IPR001005 -
Stsc151375g00005 357 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Stsc151375g00005 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Stsc151375g00005 357 Gene3D - 8 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151375g00005 Stsc-Chr151375 27599 30462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151375g00005 5 348 MYB Transcription Factor Family AT2G37630 66.027 6.31e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151375g00005 Myb_DNA-bind_6 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151375g00005 K09422 - gmx:100819082 536.569