Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151372g00001 ATGACCTGTTTCCCTTTCATATGTTGTAGGAAGGCAACTTCTGCACCAAAAAGAGATCCACACATTGATGAAGAACTTACAGGCATTCAAAATGTGAAACTATATTCTTACAAAGAACTAAAACTTGCCTCTGACGATTTCAGCCCTGCCAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGATTGCTTAAAGGTGGAAAAGTTGCAGCTATAAAAGTTCTGTCAGATGAATCAAAACAAGGGGTAAAGGAATTCTTGACAGAGATTAATGTGATCTCAGAAATAAAGCATGTAAATTTGGTTGAGTTATATGGTTGTTGTGTGGAAGGAAATCATAGAATATTAGTCTACAATTACCTTGAGAACAACAGCCTTGCACAAACCCTTCTAGGTGGAGGTCACAGTAGTACCTATTTTAATTGGCGAACTCGAACTCGGATATGCATTGTGGTTGCTCAAGGTCTTGCATTTCTTCATGAGGAAGTAACACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTCGACAAGGACCTCTCGCCCAAGATTTCAGACTTCGGTCTTGCAAAGCTTATTCCTTCATATATGACTCATGTCAGCACAAGAGTAGCAGGAACAATAGGTTATTTGGCACCGGAGTATGCAATCAGGGGGCAGCTAACACGAAAAGCAGATATTTACAGTTTCGGAGTCCTCATTGTGGAGATAGTCAGCGGGAGAAGTAATACAAATACACTGTTACCGAAAGGGAATCAGTATATTCTTGAAACGACATGGGAACTTTATGAGCAGAAGGAATTGGTAGAGCTGGTGGACATGTCACTAAACGGGGAATTTGATGCCGAAGAGGCTTGTAAGTTTCTAAAGATTGGCCTTCTGTGCACTCAGAGTAATCCGAAGATTCGGCCATCCATGTCCTGTGTTGTCAAGATGCTCACCGGGGAAATGGATGTCGACGAAAGTAACCTAACAAAACCCGGCTTGATTTCAGACTTTATGGACCTTAAAATTAGAGATCAAAATAGTAATGATATAAAGACTTTGTCTTCAAGCAATGTATCCTCTGTATCACACAACCAAGATACCACTATGTCATTCGCTGCTTCAAGTGCTGGAACTACAACGTTCACTGTGAAATATGATCAAAGCTTTTAA 1173 0.4041 MTCFPFICCRKATSAPKRDPHIDEELTGIQNVKLYSYKELKLASDDFSPANKIGEGGFGSVYKGLLKGGKVAAIKVLSDESKQGVKEFLTEINVISEIKHVNLVELYGCCVEGNHRILVYNYLENNSLAQTLLGGGHSSTYFNWRTRTRICIVVAQGLAFLHEEVTPHIVHRDIKASNILLDKDLSPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLIVEIVSGRSNTNTLLPKGNQYILETTWELYEQKELVELVDMSLNGEFDAEEACKFLKIGLLCTQSNPKIRPSMSCVVKMLTGEMDVDESNLTKPGLISDFMDLKIRDQNSNDIKTLSSSNVSSVSHNQDTTMSFAASSAGTTTFTVKYDQSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151372g00001 390 PIRSF TyrPK_CSF1-R 278 384 - -
Stsc151372g00001 390 PIRSF TyrPK_CSF1-R 48 128 - -
Stsc151372g00001 390 PIRSF TyrPK_CSF1-R 144 259 - -
Stsc151372g00001 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc151372g00001 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Stsc151372g00001 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc151372g00001 390 FunFam cold-responsive protein kinase 1 18 122 - -
Stsc151372g00001 390 FunFam cold-responsive protein kinase 1 123 334 - -
Stsc151372g00001 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 357 - -
Stsc151372g00001 390 SMART serkin_6 47 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151372g00001 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Stsc151372g00001 390 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151372g00001 390 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151372g00001 390 CDD STKc_IRAK 53 320 - -
Stsc151372g00001 390 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151372g00001 Stsc-Chr151372 4467 10385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151372g00001 17 337 Receptor kinase-like Gene Family AT1G56120 53.251 1.85e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151372g00001 Pkinase 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151372g00001 - - gmx:100800503 586.26