Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151370g00007 ATGGGAGGGGCATCACTGCCTCCAGGTTTTCGTTTCCACCCCACTGATGAAGAACTGATAGGATACTACCTGAAAAGAAAAGTTGATGAGCTTGAAATTGAACTTGAAGTTATCCCTGTCATTGATTTGTACAAGTTTGATCCTTGGGAGTTGCCTGAGAAATCATTCCTACCAAAAAGAGACTTGGAATGGTTCTTCTTCTGCCCAAGGGATCGAAAGTATCCGAATGGTTCAAGAACAAACAGAGCTACCAAAGCTGGATACTGGAAAGCCACTGGAAAAGACAAGAAGGTTGTGTGCCAATCTAATCCCTCAACATCAATCATGAAAGCCACCGGATATCGCAAGACCCTTGTTTTCTATCGTGGAAGAGCTCCTTTAGGTGATCGAACCGATTGGGTTATGCACGAGTATCGCCTCTGCGATGATCTTGGCCAGGACTCACCAAGTTTTCAGGGTGCTTATGCTTTGTGCCGGGTTATTAAGAAGAGTGACAAGGCCAGTGATTGCAAGGGTAAAAGAGGTGTCAGCAGTTCCAAGAATGAGAATGAGAGCTCAATGAGATTGTCATGCTCTAAGGAGAACTTGAGCATCTCTGCTGACATTTCTTCTCAAGCAAGTCAGCTATGCAGTGAGAGTCGTTATTCAAGCCCTATAGCTTCTCCTTGTGCTGATAATGTGGCTGCAACGGCCGCGTTTGAGCCACCTTCTGTGGACACTAATCCTTCAAGCTTCTTGGTCTCCCCTGATATGATCCTTGATTCTTCGAAGGACTTTGCTCAAGCACAAGGTGCTACTTCAGGATACTTACTGCATAATGAATTGCCAAGTACAATGACACCATGGCAATCATTGGAACATACAGAAATTTCATCCAGTTCATCCTACTCAAATTTCAATGGGGAAATAGAATTCTCTGATGAACTCGGCTTAATTAGCCGCATGTCGCCTTACTCGAGACAAGTAGACTTGTTGAACTTCTATAGAAATGAGGATATGCTGTTTGAAGAATATGACCAAATCAATTCAATCAGAGATCCAAGGCATTTCTGA 1053 0.4359 MGGASLPPGFRFHPTDEELIGYYLKRKVDELEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQSNPSTSIMKATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDLGQDSPSFQGAYALCRVIKKSDKASDCKGKRGVSSSKNENESSMRLSCSKENLSISADISSQASQLCSESRYSSPIASPCADNVAATAAFEPPSVDTNPSSFLVSPDMILDSSKDFAQAQGATSGYLLHNELPSTMTPWQSLEHTEISSSSSYSNFNGEIEFSDELGLISRMSPYSRQVDLLNFYRNEDMLFEEYDQINSIRDPRHF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151370g00007 350 FunFam Nac domain-containing protein 86 15 166 - -
Stsc151370g00007 350 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
Stsc151370g00007 350 Gene3D NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Stsc151370g00007 350 ProSiteProfiles NAC domain profile. 6 163 IPR003441 GO:0003677|GO:0006355
Stsc151370g00007 350 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Stsc151370g00007 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151370g00007 Stsc-Chr151370 38372 40337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151370g00007 1 310 NAC Transcription Factor Family AT4G17980 53.846 1.64e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151370g00007 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151370g00007 - - adu:107487585 632.098