Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151370g00006 ATGAGGGAGAAAGGGAAGCACAGCCGAACCAATCGCAAACATCGATCCTCCTCCAATTCGGATTCTTGCAGCAATAAAACGGCTGCCACGCCCAATTCCATGCGAAACCCTAACATTCCTGCCTTCAGCTGGGGTTTCTGCACCGAGGACGAGCTGCAAGAGCTTCTCTTGAGGAACATGGAGATCGTCTACAACGACGTCGTTTCCAAGATCGTCTCCATGGGATACGACCAGGACCAAGCTCTCAACGCCGTCCTCTCCAATGGCCATTGTTTCGGCGGCGTCGATGCCTTGGAGAACATTCTCAACAATTCCTTGGCTTTTCTCAAAGGCAACGCCAATTCGGACGGTAACGAAAATCCTATGCCTGTTTTCACCGATTTGATGCAGCTGGAGGCGTATTCTCTTGCCGCTATGGTGTGTCTCTTGCAGCAATTGAGGCCCAATTTGACTAAGGGTGATGCATTGTGGTGTTTGCTTGTCTCTGATTTTCATATCGGAAAGGCTAGCACAATTCAAGCTCCAGGTGCAAACAATGAGTGTTCTTGTTGTCCTTTGCATTCTGCTAAAACTACCAGCAACACCAATGGTGACAATGCAGCTGCTGTTGTGGCTCCATCTCCACCTGTTTGTAAGCCTCGATGGGAGCCTGCGGATTTTAATGTGGTATTCGCTTGCGGCCATGAAATGAGTTTGAAATTGCAGAGAGATATTGAGTTCCCAAAAAGGTTCAATCTTTCTCCTTCCATGAAGTCCTTGTTGAAAAGAAATGTTGCATTGTGCGCTGCTAGTTTTAAGGCTCACTCAAAACAGCTTCAGCAGCCACTAGACAAGGCCGTTCCTGCTGGTAGCACCGCCCCGGAAGCTACTCTCCCGGAGGAGAAGGCTAGTGATCCTCACTATGTGAATGCACAGGATGCTGTGACCTCGATGATGAATAAACTTCGTGAGATGAATCTTGATGATTGTATGAAGCGTCTTGAAGAGGATCAGAAGGATGAGGTGTTACTTGCTCTGTTTAATCAGGTTAAGGATCTTGAGAAAGAGGTTAAGGTCCGAAAGGATTGGGCTCATGAGAGGGCAGTGCAAGCAGCTACAAAGCTGAGCAACGATATGGCTGAGTTGAAAATGTTGAGGATGGATAGAGAGGAGGTTCAGAAGTTAAAGAAAGGTAAGCAGGCGCTTGACGATTCGACGATGAAGAAATTGTTAGATATGGAGGAGGCCTTGAGAAAGACTAGTGGTGAAGTTGACCAGGCAAATTCAACTGTCAAGAAGTTAGAGACGGTGAGTGCCGAAATTAGAGCAGAGTTGGAGGCTGCTAAATTGAGTGCATCAGAGTCTGTCAAAAACTGTAAAGAGGTTGAGAAAAGGGAGAAAAAATGTTTAAAGAGGCTTCTAGCTTGGGAAAAACAGATAGCAAAGCTTCAACAGGAGATTTCAGATGAAAAACAGAAGATATTGGAGATTGAAGAAGAATTGCCTCGGATTAGACAGTGTCAGAAAGAAGCCGAGGCCAAGGTCAGGGAAGAGATGAAGGCTAAAGAGGAAGCGCTGGTACTAATTGAGGAGGAACGCCGTAGCAAGGAAGCAGCCGAGGCTGACAAGAAGAGAGATCTTAAGGCTTTACGACTGAAGATAGAGATAGATTTCCAACGTCGCAAGGATGATCTCCTGAGGCTCGAGCAGGAGCTTTCATGCCTTAAAGTATCTGGCCGATCTGCCGATAGGCATCCTAAATCAAAAGCTTTGTGGACAGGGGATTCTGAGGTTGCAAAGCCCCAAAGGGAGACAATAACAAAGCTTCTTAAAGAATTAGACAATCTTGAGGATCTTGAAAAAGAAGTCAATGGTGGTAGAGAATGTATCATATGCAAGGAAGAGGAAGTTTCAATTGTTTTCTTGCCGTGTGCACACCAAATTATGTGTGCTTGCTGCAGCCAGGAGTATGGGAGGAAGGGCAAAGCTACCTGTCCCTGCTGCCGGGTTCCAATTGAGCAGAGAATCCGTGTATTCGGTGCAGGTTCTTAA 2031 0.4648 MREKGKHSRTNRKHRSSSNSDSCSNKTAATPNSMRNPNIPAFSWGFCTEDELQELLLRNMEIVYNDVVSKIVSMGYDQDQALNAVLSNGHCFGGVDALENILNNSLAFLKGNANSDGNENPMPVFTDLMQLEAYSLAAMVCLLQQLRPNLTKGDALWCLLVSDFHIGKASTIQAPGANNECSCCPLHSAKTTSNTNGDNAAAVVAPSPPVCKPRWEPADFNVVFACGHEMSLKLQRDIEFPKRFNLSPSMKSLLKRNVALCAASFKAHSKQLQQPLDKAVPAGSTAPEATLPEEKASDPHYVNAQDAVTSMMNKLREMNLDDCMKRLEEDQKDEVLLALFNQVKDLEKEVKVRKDWAHERAVQAATKLSNDMAELKMLRMDREEVQKLKKGKQALDDSTMKKLLDMEEALRKTSGEVDQANSTVKKLETVSAEIRAELEAAKLSASESVKNCKEVEKREKKCLKRLLAWEKQIAKLQQEISDEKQKILEIEEELPRIRQCQKEAEAKVREEMKAKEEALVLIEEERRSKEAAEADKKRDLKALRLKIEIDFQRRKDDLLRLEQELSCLKVSGRSADRHPKSKALWTGDSEVAKPQRETITKLLKELDNLEDLEKEVNGGRECIICKEEEVSIVFLPCAHQIMCACCSQEYGRKGKATCPCCRVPIEQRIRVFGAGS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151370g00006 676 Pfam Family of unknown function (DUF6592) 60 169 IPR046527 -
Stsc151370g00006 676 PANTHER OS05G0141500 PROTEIN 3 671 IPR046934 -
Stsc151370g00006 676 MobiDBLite consensus disorder prediction 1 34 - -
Stsc151370g00006 676 Coils Coil 417 444 - -
Stsc151370g00006 676 ProSiteProfiles Zinc finger RING-type profile. 622 662 IPR001841 -
Stsc151370g00006 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 673 IPR013083 -
Stsc151370g00006 676 MobiDBLite consensus disorder prediction 17 34 - -
Stsc151370g00006 676 Coils Coil 459 493 - -
Stsc151370g00006 676 MobiDBLite consensus disorder prediction 274 297 - -
Stsc151370g00006 676 Coils Coil 497 535 - -
Stsc151370g00006 676 CDD RING-HC_MIP1-like 620 671 - -
Stsc151370g00006 676 SUPERFAMILY RING/U-box 602 668 - -
Stsc151370g00006 676 Pfam Zinc finger, C3HC4 type (RING finger) 620 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151370g00006 Stsc-Chr151370 30475 33267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151370g00006 622 672 C3H Transcription Factor Family AT1G73950 41.176 3.46e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151370g00006 - - adu:107487583 1032.71