Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151370g00005 ATGCCAGTTCCACTTGCTCCCTACCCAACACCCACAGTTCCATATACTACACCTCCATCAAATGTAGGTGCACAAAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTTCTTATGTATCCAGTTGGAGCTACATCAGTGTGTTGTGCAGTTTGCAATGCAGTCACTCCGGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTCATGTACATCCGAGGAGCCACGAGTGTTCAATGTTCTTGTTGCCACACCGTCAATCTAGCACTTGAAGCAAATCAGGTGGCGCATGTCAATTGTGGGAACTGTAGGATGCTGCTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTATGCAGTTTTGTAACATCTGTTGGGGCCTCATCAACAAGCACCGAGCAGAAATTCAGCACTTAA 444 0.473 MPVPLAPYPTPTVPYTTPPSNVGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTPVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGASSTSTEQKFST 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151370g00005 147 PANTHER PROTEIN LSD1 16 56 IPR040319 -
Stsc151370g00005 147 NCBIfam zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Stsc151370g00005 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Stsc151370g00005 147 NCBIfam zinc finger domain, LSD1 subclass 27 56 IPR005735 -
Stsc151370g00005 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Stsc151370g00005 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Stsc151370g00005 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151370g00005 Stsc-Chr151370 25107 27046 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc151370g00005 zf-LSD1 8.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151370g00005 - - mnt:21406053 268.085