Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151370g00003 ATGGATTCTCGGGAACCCCACCACCAACCCTCCCATCATCACCACCATCACCACCACCACCACCAGCAACAACAACCGCCTCCTAACATCATGGTCGGCGTGGGACCCACCCCTTACCCTCCCTCCATGATGGCCCCCACCACCGCCCGATTTCCTTTTACCTCCGTCGTCCACCACCAGCATCAGCAGCACCAGCACCAGCACCAGCACCAGCAACAGCACCACCACCAGCAACAACAACAGCAACAACAGCAACATCACCAGCACCAGCACCAGCAGCCGCCCGCTCCACCAACCAACAACAACAACGGAAACGCCGCTAACGATAATAACAACAACGCCGCCGCGCTTTACGATGGTTCCTCTTCCGCCCTTAAGCCCTGCGGATTCCCCACCACCGACTCCGCCTCCGTCACCAAGAAGAAGAGGGGCCGACCCCGCAAGTACTCCCCAGATGGCAACATTGCCTTGGGACTCTCCACCACCCACGCCTCCCCTTCTCCTGCAGCACCACCACGCGCCGATTCCTCTGCTGTAGCTTCCGGTGGCGGTGCCGCAACCCCCTCATCGGAGCCTCTGGCCAAGAAGCACAGAGGGAGGCCTCCTGGCTCCGGCAAGAAGCAGATGGATGCTCTTGGTGCTGGTGGGATTGGTTTTACTCCGCACGTGATCTTGGTGGAGTCTGGTGAGGATGTTGCAGCTAAAATTATGGCTTTCTGCCAGCAAGGACCTCGGACTGTATGCATTCTTTCTGCTAATGGTGCAATCTGTAATGTCACCCTTAAGCAGCCGACAATGTTGGGGGGTACTGTGACATACGAGGGCCGATTTGAGATTATATCACTGTCAGGTTCTTTACTATTTTCTGAAAATAATAGTGATCGAAGCAGACCGGGTGGCTTGAATGTCTCCCTTGCAGGTTCCGATGGACGGGTTTTAGGGGGTGGAGTTGCTGGAATGCTTACTGCAGCATCACCAGTACAGGTCATTGTGGGTAGCTTTATTGAGGATGGCAAAAAGTCTAATAGCTCAAGTAACCAGAAATCAGGGCCATCAACAACGCCATCAACCCAAATGTTACATTTTGGCGCTCCTATGACTCCAACCAGTCCTACCTCTCAGGGGGGTTCGTCGGAATCATCCGACGATAATGATCATAGTCCTCCTAACAGGGGCCCTGGTCTCTACAATAATGCTAGTCAGCCCATTCATAATATGTCGATGTACCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA 1263 0.5424 MDSREPHHQPSHHHHHHHHHHQQQQPPPNIMVGVGPTPYPPSMMAPTTARFPFTSVVHHQHQQHQHQHQHQQQHHHQQQQQQQQQHHQHQHQQPPAPPTNNNNGNAANDNNNNAAALYDGSSSALKPCGFPTTDSASVTKKKRGRPRKYSPDGNIALGLSTTHASPSPAAPPRADSSAVASGGGAATPSSEPLAKKHRGRPPGSGKKQMDALGAGGIGFTPHVILVESGEDVAAKIMAFCQQGPRTVCILSANGAICNVTLKQPTMLGGTVTYEGRFEIISLSGSLLFSENNSDRSRPGGLNVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIEDGKKSNSSSNQKSGPSTTPSTQMLHFGAPMTPTSPTSQGGSSESSDDNDHSPPNRGPGLYNNASQPIHNMSMYHHQLWAGQTQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151370g00003 420 SUPERFAMILY AF0104/ALDC/Ptd012-like 219 336 - -
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 9 23 - -
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 337 401 - -
Stsc151370g00003 420 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 72 392 IPR039605 GO:0003680
Stsc151370g00003 420 SMART AT_hook_2 195 207 IPR017956 GO:0003677
Stsc151370g00003 420 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 337 383 - -
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 74 119 - -
Stsc151370g00003 420 Gene3D - 221 349 - -
Stsc151370g00003 420 CDD DUF296 220 334 IPR005175 -
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 31 45 - -
Stsc151370g00003 420 Pfam Plants and Prokaryotes Conserved (PCC) domain 221 335 IPR005175 -
Stsc151370g00003 420 MobiDBLite consensus disorder prediction 1 210 - -
Stsc151370g00003 420 ProSiteProfiles PPC domain profile profile. 215 356 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151370g00003 Stsc-Chr151370 13477 18858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151370g00003 139 420 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.051 9.01e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151370g00003 - - qsa:O6P43_033975 391.734