Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151370g00001 ATGGCTGGTTTGGATTTAGGAACAGCTTCACGCTTCGTTCAAAACCTCCACAGACCAGATTTCAACCTCCATCATCATCAGAACCACCACCTTCATCATCATCATCATCATCATCACCATCATCAACATCACCAACAAGATTCCGAAGAAGACGCCAACAACAACAACAACCAAGATCACTATGATCAGGATGATGCTCCCCACAACCACCAGACAGGTTTGGAGCTCGCATCGGCCTCCGCGGGGGACGTCGTGGCTCGCCGCCCTAGGGGGAGGCCGCCAGGATCCAAGAACAAGCCGAAGCCGCCGGTCATCATAACAAGGGAGAGCGCCAACACCCTCAGAGCACACATCCTCGAGGTAGCAAGCGGCTGCGACGTCTTTGACAGCGTCGCCACCTACGCCCGCCGTCGTCAGCGCGGGATCTGCATCCTCAGTGGCAGCGGCACCGTCAATAACGTCACCATCAGGCAGCCAGCCGCCGCCGGAGCAGTAGTCACGCTCCACGGAAGGTTCGAGATATTATCCCTCTCCGGATCGTTTCTTCCGCCTCCAGCTCCTCCCGGCGCCACCAGCCTAAGCATATACCTGGCAGGTGGGCAGGGGCAGGTGGTTGGAGGGAGTGTGGTTGGGGAGTTGATCGCGGCGGGGCCGGTGATTGTGATTGCTGCTTCTTTCACAAACGTGGCTTATGAGAGGTTGCCTTTGGATGAAGATGAACAGGTTCAAGGTGGTGGTGGCGGTGGCGGTGGTGGTGGTAATAGTCCTTTTGGAGAGCCTTCTTCAGTGCTTCCTTTCTTCAATTTGCCGGTGAATATGACGAATGTTCAGTTGCCATCAGCAGTAGATGGGTTTTCATCACGTCCACCACCACCACCTCCACCACAATTTTAA 894 0.5548 MAGLDLGTASRFVQNLHRPDFNLHHHQNHHLHHHHHHHHHHQHHQQDSEEDANNNNNQDHYDQDDAPHNHQTGLELASASAGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGCDVFDSVATYARRRQRGICILSGSGTVNNVTIRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLDEDEQVQGGGGGGGGGGNSPFGEPSSVLPFFNLPVNMTNVQLPSAVDGFSSRPPPPPPPQF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151370g00001 297 ProSiteProfiles PPC domain profile profile. 111 250 IPR005175 -
Stsc151370g00001 297 CDD DUF296 115 198 IPR005175 -
Stsc151370g00001 297 MobiDBLite consensus disorder prediction 43 69 - -
Stsc151370g00001 297 MobiDBLite consensus disorder prediction 239 261 - -
Stsc151370g00001 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 228 IPR005175 -
Stsc151370g00001 297 FunFam AT-hook motif nuclear-localized protein 114 241 - -
Stsc151370g00001 297 MobiDBLite consensus disorder prediction 28 104 - -
Stsc151370g00001 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 250 IPR014476 GO:0003680
Stsc151370g00001 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 240 - -
Stsc151370g00001 297 Gene3D - 114 243 - -
Stsc151370g00001 297 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151370g00001 Stsc-Chr151370 5055 6634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151370g00001 1 285 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.816 5.62e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151370g00001 - - qsa:O6P43_024484 343.584