Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151369g00005 ATGACAATTCCTGAAAAGAATCCCTTCAAGTTAGTGCCTTTCTCGGAACAAGATGCTGCTAAACTCGCACAAAGGTACGATGCAACGACGGTGATAACTTTACTTCAGGAGGTGGCTCAGGCTCAGTATCCGAACGCAAAAATCGATTGGAATGAATTGGTGAAGAGAACCTCAACTGGAATCTCTAGTGCCAGGGAGTATCAGATGCTGTGGCGCCATTTAGCCTACGGTCATGACCTTGTCGAAGATCTCGAAAATGGCGCTGATCCTCTGGATGATGATAGTGACCTAGAATATGAGGTTGAAGCATTACCCCCCATAAGTGCGGAAGTAGCATCAGAGACTGTGGCATGTGTGAAGGTAATGATTGCTTCTCATTCACTAAGTGAATCAACGCCTAGTAGTTCAACAATTGAGGCTCCACTGACTATACATGCTCCAGTTTGCAATTCATCTAGAACTTCTAACAAGAGCTCACAATCTACTAGTTTGATGCAAGGGACAGAGATTATTTTTCCAGTTACTATTAAGAGACAGACACTGCCAAATGTATCATCAACAGACAATATTGAAAGCAAGGGATTAGATGGCAGTAACATGGCTTCCAAGAAGAGGAGAATGGCATGGTCAGAGGAAGAGGACAATCTGCTACGAGATGCTGTTCAAAGATTTGGTGAAGGGCATTGGGCTACCATTGCAAAAGGAGAAAACTTTCCTGTTAAGAGAACTGCTACACAGATTTCTCACAGGTGGAACTTCTTGCGAAAGAAAGATGATAGTACCAATTCAGGAACCATCTCGACCAGCACGCGTTATAATACTGCTGAACAATTGGCAACTCGTCACTCGTTATCTTTAGCGCTTGATATGCCATTGGAAAAGTTAACTTCTCCTGGAGTGAACAGTAGGAGACCCTTGAACATGTCTGGTAAAAGCTCATTGCAGCATGTTGGTATAGAATCTTCAACGCTTCATAGTAATGTTGTACCACCCCAGCATCCTTCTCAACAATCTTTGGTGGGATCTTGTGGTTCCTCACTGAAATCTACATTAGTCTCTGAAAAACCGTTGTCGGAAGTTACCCCAACTCTTAACCCTATGGTAAAAGGCACCACAGTGGTCTCTGGTGCCCAAATAGTTTCATCGTCGGATTCTGCATCATGTGTAAAGGTTTCGCATGGAAATGTGGCTGCTACAACAAATAGTTCTTTGACAAAGTCATCAACTCCTGCTCGTTTGCCTCCGAAATCAAAGATACAATTCCGCACAGGTCCAAGTTCAGCACCTGTTCGCACCCAATCAACTATTGTTATTGCCTGTCCTGCATCAGGCATTAAACCCCCTAAAGCTTCCTCTTTGACAATGGAGAAGTCGCCTGCAGCTTTGTCTACCTCATCTGAGCAGGAAAAACATGATAACTCTCTGGTTTATGAAGCTCCAACAAAGCAAGAAGTTCGAGTTTCTAATCCTAATCGCATGCATAGTCCTCCCAAAGAAGGTAAGACCAAAGTAAAGGAAATTACAAGAAGTAAGGAGGAAGAAACAGAAGGGAATAAATCAGGGAACTGCTAA 1572 0.4332 MTIPEKNPFKLVPFSEQDAAKLAQRYDATTVITLLQEVAQAQYPNAKIDWNELVKRTSTGISSAREYQMLWRHLAYGHDLVEDLENGADPLDDDSDLEYEVEALPPISAEVASETVACVKVMIASHSLSESTPSSSTIEAPLTIHAPVCNSSRTSNKSSQSTSLMQGTEIIFPVTIKRQTLPNVSSTDNIESKGLDGSNMASKKRRMAWSEEEDNLLRDAVQRFGEGHWATIAKGENFPVKRTATQISHRWNFLRKKDDSTNSGTISTSTRYNTAEQLATRHSLSLALDMPLEKLTSPGVNSRRPLNMSGKSSLQHVGIESSTLHSNVVPPQHPSQQSLVGSCGSSLKSTLVSEKPLSEVTPTLNPMVKGTTVVSGAQIVSSSDSASCVKVSHGNVAATTNSSLTKSSTPARLPPKSKIQFRTGPSSAPVRTQSTIVIACPASGIKPPKASSLTMEKSPAALSTSSEQEKHDNSLVYEAPTKQEVRVSNPNRMHSPPKEGKTKVKEITRSKEEETEGNKSGNC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151369g00005 523 MobiDBLite consensus disorder prediction 400 439 - -
Stsc151369g00005 523 SMART sant 205 257 IPR001005 -
Stsc151369g00005 523 ProSiteProfiles Myb-like domain profile. 201 255 IPR001005 -
Stsc151369g00005 523 MobiDBLite consensus disorder prediction 400 523 - -
Stsc151369g00005 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 259 IPR017930 -
Stsc151369g00005 523 CDD SANT_TRF 209 256 - -
Stsc151369g00005 523 MobiDBLite consensus disorder prediction 496 523 - -
Stsc151369g00005 523 Gene3D - 198 262 - -
Stsc151369g00005 523 Pfam Myb-like DNA-binding domain 206 253 IPR001005 -
Stsc151369g00005 523 SUPERFAMILY Homeodomain-like 204 257 IPR009057 -
Stsc151369g00005 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 10 507 - -
Stsc151369g00005 523 MobiDBLite consensus disorder prediction 456 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151369g00005 Stsc-Chr151369 24220 27977 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc151369g00005 Myb_DNA-binding 5.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151369g00005 - - aip:107606216 775.778