Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151368g00002 ATGGCTAGCATCCTTTGCCACTTTGTTTTGCCCATTTTGATTGCCATCCTTTTCATTCCAAACCCTACTTACTGTGCAAAGCAATCCAAAATAATTGGCATGAAAATGAATGTAATTGATCAATGCTGGAGATGGAATCCCCAATGGAGGACCCACCGGACGCAACTGGCCAACTGCTCCGTTGGCTATGCCGGCAAGATGATGAACAACATTGGCACTGACCTCATCCATTATGAGGTTATAGACCCTACTGATGACCCCATAAACCCTAAGCCTGGTACCTTGAGATATGGAGCTTCTGTGATTCAACAAAAAGTTTGGATCACATTCAAAACAGACATGCAAATCACATTGGCAAAACCCCTTCTCATTAGCAGCTTTACCGCCATTGATGGTCGTGGCGCCAACGTCCACATTGCTCACAATGCATGCTTTATGATCTTTAAGGCGACAAACGTGATAATCCACAACGTTCGGATCCACCATTGTAAAGCACAAGGTCCGGGTATGGTGGTGGGTCCAAATGGGAAGGGATGGATGCAGTATGCAATTGGTGGAAGCATGGGACCCAGCCTCAAAAGCCAATCTAACCTCTTCATAGCACCCCAATCTGGGAATAAGGAGGTGACATGGAGAAACGGCAATGGAGAAAACGGGAAGACGTGGGAATTTCATTCAGTAGGGGATGCTTTTGAAAATGGAGCTTCCTTCACAGTAACTAAAGGAGGTCGTGTGCCAAAGCCAAATTATAGTAAAGAACAATATTTTAAAGTTCTTGATGCTAAATCTGTCAGATTTTTGACAAGATCGTCTGGCGTGCTATGA 825 0.4461 MASILCHFVLPILIAILFIPNPTYCAKQSKIIGMKMNVIDQCWRWNPQWRTHRTQLANCSVGYAGKMMNNIGTDLIHYEVIDPTDDPINPKPGTLRYGASVIQQKVWITFKTDMQITLAKPLLISSFTAIDGRGANVHIAHNACFMIFKATNVIIHNVRIHHCKAQGPGMVVGPNGKGWMQYAIGGSMGPSLKSQSNLFIAPQSGNKEVTWRNGNGENGKTWEFHSVGDAFENGASFTVTKGGRVPKPNYSKEQYFKVLDAKSVRFLTRSSGVL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151368g00002 274 PANTHER PECTATE LYASE 18-RELATED 179 274 IPR045032 GO:0030570
Stsc151368g00002 274 SUPERFAMILY Pectin lyase-like 178 272 IPR011050 -
Stsc151368g00002 274 Gene3D - 36 177 IPR012334 -
Stsc151368g00002 274 Gene3D - 178 274 IPR012334 -
Stsc151368g00002 274 SUPERFAMILY Pectin lyase-like 26 176 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151368g00002 Stsc-Chr151368 16452 17781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151368g00002 177 214 Polysaccharide Lyase AT5G09280 63.158 4.47e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151368g00002 K01728 - gmx:100780437 268.855