LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151364g00005	ATGGAAAAGAGACAAGGGAACACAGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTGGACTACTTCTTCAGTTACTGCTTTGCTTTCTTCTAAAGGTGTCAATTATGAAGTTGTAGCTTTGATAGAGTTGAAGAGCAATCTAAAGGATCCTCATAATGTTCTTAGTAATTGGGATGATAATGCTGTTGATCCTTGCAGTTGGGCCATGGTTTCTTGCTCTTCTGATCGTTTTGTTGTTACTCTAGCAATTCCAAGCCAAAATTTATCCGGTACACTTTCACCAAGCATAGGAAACTTAACAAACCTTCAGACAGTGCTATTGCAAGAGAATAATATAACAGGACCAATACCCTCTGAGATTGGGAAGCTACAAAAGCTTCAAACTCTTGATCTTTCTGAGAACACTTTCACTGGTCAACTTCCAGATTCTCTGTCCCATATGAGTGGTCTCCAATATTTGCGGTTAAATAACAACAGTCTCTATGGAGCAATTCCTTCCTCTTTGGCTAATATGTCCCACCTTGCCTTTCTGGACATCTCTTACAATAACTTAAGTGGACCTGTACCTAGAATAAATGCAAAAACATTCAGTATTGTAGGCAATCCCCAAATATGTAATAACAAAGAACTCGAGCAGAACTGTTTCAAAACAACACTGATTCCTTCTGCCATGAATAGTTCTCAAGATTCACAATCCTCCAATGAAACAAAGAGCCACAAAAGGGGCTTAGCGGTTGCTTCAAGCCTAAGCTGCATCTGCTTACTAATTCTTGGGTTCGGATTCCTCCTATGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTAAATGAACAACAACACGAAGAGGTTTGCCTGGGTAACCTGAAGAAGTTCCATTTCAGAGAACTTCAAGTTGCAACAAACAATTTCAGCAGCAAGAACTTGGTTGGTAAAGGTGGCTTTGGAAATGTGTACAAAGGGTACCTTCAAGATGGTACAGCCATAGCAGTGAAGAGGCTGAAAGATGGTAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTTCACCGGAATCTCCTTCGCCTTTATGGATTTTGCATGACAGCAACTGAGAGGCTCTTGGTTTACCCCTACATGTCCAACGGCAGTGTAGCTTATCGTCTTAAAGCGAAGCCAGCACTAGATTGGATCACAAGGAAGAGGATAGCATTAGGAGCTGCAAGGGGATTGCTATATCTGCATGAGCAGTGTGATCCAAAGATTATTCATAGGGACGTGAAAGCTGCAAACATCTTGCTGGATGTTTACTGTGAGGCAGTTGTAGGAGATTTTGGACTCGCAAAGTTGTTGGATCACCAAGATTCGCATGTCACCACGGCCGTTAGAGGGACTGTAGGGCACATAGCCCCCGAGTATCTCTCAACTGGCCAGTCCTCTGAGAAAACTGATGTCTTTGGGTTTGGAATCCTTCTTCTTGAGCTCATTTCTGGCCAAAGAGCTCTCGAATTTGGCAAAGCAGCAAACCAGAAAGGAGCTATGCTTGATTGGGTGAAGAAGATCCATCTAGAGAAGAAAATAGACTTGCTAGTTGATAAGGAACTGAAGATCAACTATGACAAGATTGAGCTTGATGAGATTGTTCAAGTAGCTTTGTTATGCACTCAATACCTTCCAAGCCATAGGCCAAAGATGTCTGAGGTAGTTAGGATGCTTGAAGGAGATGGTCTTGCTGAGAAATGGGAAGCCTCACAGAGGGCAGAGTCCAGTCGAAGCAGAGGGAATGAACTCTCTTCTTCCGAGCGATATTCCGATCTCACTGATGACTCTTCATTGCTTGCCCAAGCAATGGAACTTTCCGGACCCAGATGA	1881	0.4258	MEKRQGNTAFFFFFFFFFMWTTSSVTALLSSKGVNYEVVALIELKSNLKDPHNVLSNWDDNAVDPCSWAMVSCSSDRFVVTLAIPSQNLSGTLSPSIGNLTNLQTVLLQENNITGPIPSEIGKLQKLQTLDLSENTFTGQLPDSLSHMSGLQYLRLNNNSLYGAIPSSLANMSHLAFLDISYNNLSGPVPRINAKTFSIVGNPQICNNKELEQNCFKTTLIPSAMNSSQDSQSSNETKSHKRGLAVASSLSCICLLILGFGFLLWWRQRYNKQIFFDVNEQQHEEVCLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGYLQDGTAIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVAYRLKAKPALDWITRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDVYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHLEKKIDLLVDKELKINYDKIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESSRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151364g00005	626	FunFam	Somatic embryogenesis receptor-like kinase 1	383	595	-	-
	Stsc151364g00005	626	ProSitePatterns	Protein kinases ATP-binding region signature.	312	334	IPR017441	GO:0005524
	Stsc151364g00005	626	ProSiteProfiles	Protein kinase domain profile.	306	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151364g00005	626	Gene3D	Phosphorylase Kinase; domain 1	275	382	-	-
	Stsc151364g00005	626	Pfam	Leucine rich repeat	101	161	IPR001611	GO:0005515
	Stsc151364g00005	626	MobiDBLite	consensus disorder prediction	586	614	-	-
	Stsc151364g00005	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	425	437	IPR008271	GO:0004672\|GO:0006468
	Stsc151364g00005	626	Pfam	Protein kinase domain	307	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151364g00005	626	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	34	217	-	-
	Stsc151364g00005	626	SUPERFAMILY	Protein kinase-like (PK-like)	284	576	IPR011009	-
	Stsc151364g00005	626	SMART	serkin_6	306	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151364g00005	626	Gene3D	Transferase(Phosphotransferase) domain 1	383	595	-	-
	Stsc151364g00005	626	Gene3D	Ribonuclease Inhibitor	34	216	IPR032675	-
	Stsc151364g00005	626	FunFam	Somatic embryogenesis receptor kinase 1	275	382	-	-
	Stsc151364g00005	626	Pfam	Leucine rich repeat N-terminal domain	35	74	IPR013210	-
	Stsc151364g00005	626	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	11	586	-	-
	Stsc151364g00005	626	SUPERFAMILY	L domain-like	36	199	-	-
	Stsc151364g00005	626	MobiDBLite	consensus disorder prediction	593	614	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151364g00005	Stsc-Chr151364	18357	24330	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151364g00005	8	626	Receptor kinase-like Gene Family	AT5G16000	73.089	0.0	932

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc151364g00005		Pkinase	3.6e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151364g00005	-		-	gmx:100804283	1021.92