Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151362g00006 ATGTTTACCATCTCAAGTTTCTTGGTAAACAAGAACAATCTATGGATGAGGAGTAATTCGCACGAGTTCAGGATTACACTCCTTCAACGGAGCAGGGTTGTGCATATAATGCCACCATCATTTGCATTCCAACCATTTTGCTTTAGACCTATTTCATCTATTCTATATGCTGAGAAACTTGACCAAAATATTTTGTTTGATGTGCTAGGTGAGGTTATTGGAAGGGAAGATCCAATAGATATGGTTACCAAGCAAGGTAACGAGAGCATGCGGCTGGCACTGCTGGTTGAGGATTCCGAGAAGACTACTATAAGCTGCACCGTGTTTGGAGGATTGGTGGACATGATTCAACCTCACCTGGACGCTGAGAAGTATGAACCGCTCATTGTTGCATTTCAACTTTTCAGAGCAAAAGAATGGAATGGGAAGATTAGTATACAGAGCAACTTTGAGGCATCTAATGTGCACATTAATCCAAACACCAAGGAGGCCATTTTATTCAGGGAAAGCTTAATAGGTAGCATCGAAGGTGAGACCTCACTCTCAACCCAAAGAATCAGTCACATGTCAAACAAGAAATATCGGGCTGCAATAGACGATCTCAGGGCTGGGGTTTATTCCATCGAGACAATAGAGGATGTCTACAAAGCAAAGGAGGAATGTCATAAGAAATGTATTGAGTTTGATGGAGTGTACGAGTGTGACTTATGCAAGCTAAAACCAGCACAAGTTGAAACAAGGTACAAACTTCAGGCATATGTTAGTGACGATACTGGAAGTATGTGTGTTGTACTGTGGGATGATGAAGCTACCCAAGTAGTGGGAATGAGTGCAGCAAAAGCCAAGGAGAGGATCAAGCAGGGTGATGGCGATGACTCATACCCTGAGGTGTTGAGAGCTGCATTAGACAAGAAGGTTATACTGAGGATTAATATCAAATCTGGAAATATCAGTGGGAATGAGACTATTTATAGTGCAACAAAAGCTTCATTAGACGCCAACCTTATTAGGAAGTTCAGCCAAAGTGAAGCATATCCTGGCTCTCAGGTTCGATTTTTCTATCATATAACATTGAAATTATACTTTTTTAAGATGTGGTGTTTAATAAATTGA 1113 0.4088 MFTISSFLVNKNNLWMRSNSHEFRITLLQRSRVVHIMPPSFAFQPFCFRPISSILYAEKLDQNILFDVLGEVIGREDPIDMVTKQGNESMRLALLVEDSEKTTISCTVFGGLVDMIQPHLDAEKYEPLIVAFQLFRAKEWNGKISIQSNFEASNVHINPNTKEAILFRESLIGSIEGETSLSTQRISHMSNKKYRAAIDDLRAGVYSIETIEDVYKAKEECHKKCIEFDGVYECDLCKLKPAQVETRYKLQAYVSDDTGSMCVVLWDDEATQVVGMSAAKAKERIKQGDGDDSYPEVLRAALDKKVILRINIKSGNISGNETIYSATKASLDANLIRKFSQSEAYPGSQVRFFYHITLKLYFFKMWCLIN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151362g00006 370 Pfam Replication factor-A C terminal domain 202 319 IPR013955 -
Stsc151362g00006 370 Gene3D - 43 175 IPR012340 -
Stsc151362g00006 370 SUPERFAMILY Nucleic acid-binding proteins 202 328 IPR012340 -
Stsc151362g00006 370 SUPERFAMILY Nucleic acid-binding proteins 48 171 IPR012340 -
Stsc151362g00006 370 CDD RPA1_DBD_B_like 67 172 - -
Stsc151362g00006 370 Gene3D - 179 339 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151362g00006 Stsc-Chr151362 32872 35305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151362g00006 13 278 Core DNA Replication Machinery Family AT5G08020 26.014 6.29e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151362g00006 - - ahf:112716567 449.129