Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151359g00001 ATGTCATACTCCAATTTGGATGAGAGAAGAAGCAGCTGTGTGCAAGAACAAGAATATGAAAATGACAGGTCATCACAGATTGGTCCAATTGTGACAGGCCTCATTAATGAACACACCAATTCTTCTTCTAACAAGAGTGCCACAGAAAAAATTGAGATCCTACAAAATAAATTGAATGAAGCTCAATTGACAATCCAATTGAAGAGGAAAGAAGCCAAGGATCATATAGAGAGACGCACAAAAGCAGAATGGGCAATTTGTTTATGCAATAGTAGGGCTGAAGAACTTGAATCAAGAATAAAGGAAGAAGTGAGCTTAAAAGACGAGATAAAGAAGGAAGCAGAGCAAGAGAAAGAACAAACTCACGAGATTCGAATCGAAGTGGAAGAGAGCAAGAGGAGGCTGACGTCACTATCGGAGCTCCATTCCGAGCTCTCCAAGAGGCTGCACGTGTCAAAGATAGCGAAGTCACGTGCGGAGACGCAGCTGGAGAAAGCGATCGCGGAGAGATCTGAGATGGTGAGGGAGATAGAGGAGCTGAGGAGGCAGAAGGATGTGCTCAACAGAAGGATCGAATTCTGCAAACAGAAGGACGCCATCGGAATGGCGGCGAGGTTGATGACCGAAGATCGAGAGGAGGAAGCGTGCGGTTTCAGGGAGTATTCGGAGGAGGAGGTGCGATTGGCGACGGAGAACTTTTCGGAGAGGGTTAGGTTGAAGTGCGGTGGTGATTGTAGCAATGTGTATAAAGGACGAATGATTCATTCCACCGTTGCCGTCAAGATGCTTGCCTCTTCTTTCTCCCATCAACATTTCCATGATAAAGTGAGAATTCTTGGTGATATTAGGCATGCTCATCTGATTGCTATGGTGGGCTTTTGCTCTGAGCCCAAGTGCATAGTAATGGAATACATGCACAACGGAAGCTTACGAGACATACTATTTTCTAGGAGAAGAAACCGGGCTTTAAAATGGTATGATCGGATACGAATAGCTACCGAAGTTTGCTCGGGCCTAAGCTTTCTCAATTCAGTCAAACCAAGGCCCGCTATCCACTGTCACTTGACCCTATCCAACGTCCTCCTAGACCGGAACTATGTAGCCAAGATCACGGGCTTTGGGCTTCACGATTGCCAGAACGAGGAATGTAACGTTGAGTCAGATATCCGGGCCTTGGGGGGCTTGTTGCTACACCTTCTAACAGGAAGAAATTGGGCCGGGCTTGTTGAGGAGGCCATGTTGGTAGACATGGATAGAGAAGCATTTGTTGGGGTTCTTGACGAGATGGCTGGACCATGGCCGTTGGATCTGGCTAAAGAGATTGCGGGCCTAGGGATGAGGTGCATGTCCAGCCCAGAGATGAGTTTTGGAATGGTGATGGAAGAGCTGAGAGAAATAAGAAGAAAGGGTGATGAGATAGTAGCAAGAGAAGGAAGGAGGGTAGTGAGAGGTGGAGGTGTAGATACAGATTGCTCAAGTGATATACCCACCGTTTATCTTTGCCCTATACTTCAGGATGTAATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCATACGAGCTAGAGGCAATAGAACACTGGTTGCAAACGGGACATGACACGTCACCAATGACAAACTTAAGGCTTAAGCACACATTCCTCACCCCAAATCACAGCCTTCGCTCCCTAATTGAAGATTGGCGTAGCAATAATACATCATATGAACTTGTAAATTAG 1719 0.4636 MSYSNLDERRSSCVQEQEYENDRSSQIGPIVTGLINEHTNSSSNKSATEKIEILQNKLNEAQLTIQLKRKEAKDHIERRTKAEWAICLCNSRAEELESRIKEEVSLKDEIKKEAEQEKEQTHEIRIEVEESKRRLTSLSELHSELSKRLHVSKIAKSRAETQLEKAIAERSEMVREIEELRRQKDVLNRRIEFCKQKDAIGMAARLMTEDREEEACGFREYSEEEVRLATENFSERVRLKCGGDCSNVYKGRMIHSTVAVKMLASSFSHQHFHDKVRILGDIRHAHLIAMVGFCSEPKCIVMEYMHNGSLRDILFSRRRNRALKWYDRIRIATEVCSGLSFLNSVKPRPAIHCHLTLSNVLLDRNYVAKITGFGLHDCQNEECNVESDIRALGGLLLHLLTGRNWAGLVEEAMLVDMDREAFVGVLDEMAGPWPLDLAKEIAGLGMRCMSSPEMSFGMVMEELREIRRKGDEIVAREGRRVVRGGGVDTDCSSDIPTVYLCPILQDVMKNPHVAADGFSYELEAIEHWLQTGHDTSPMTNLRLKHTFLTPNHSLRSLIEDWRSNNTSYELVN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151359g00001 572 ProSiteProfiles Protein kinase domain profile. 234 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151359g00001 572 Coils Coil 156 197 - -
Stsc151359g00001 572 Coils Coil 44 78 - -
Stsc151359g00001 572 Coils Coil 93 148 - -
Stsc151359g00001 572 Gene3D Transferase(Phosphotransferase) domain 1 220 470 - -
Stsc151359g00001 572 Pfam U-box domain 495 565 IPR003613 GO:0004842|GO:0016567
Stsc151359g00001 572 SUPERFAMILY Protein kinase-like (PK-like) 218 450 IPR011009 -
Stsc151359g00001 572 PANTHER OS02G0152300 PROTEIN 16 559 - -
Stsc151359g00001 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 569 IPR013083 -
Stsc151359g00001 572 CDD RING-Ubox_WDSUB1-like 496 551 - -
Stsc151359g00001 572 SUPERFAMILY RING/U-box 492 565 - -
Stsc151359g00001 572 ProSiteProfiles U-box domain profile. 494 568 IPR003613 GO:0004842|GO:0016567
Stsc151359g00001 572 MobiDBLite consensus disorder prediction 1 28 - -
Stsc151359g00001 572 SMART Ubox_2 498 561 IPR003613 GO:0004842|GO:0016567
Stsc151359g00001 572 Pfam Protein tyrosine and serine/threonine kinase 243 380 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151359g00001 Stsc-Chr151359 23806 28966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151359g00001 47 563 U-box Gene Family AT5G65500 51.233 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc151359g00001 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151359g00001 - - ahf:112747336 899.042