Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151353g00001 ATGAATCTCAGCAACGGCAGCGGATCCATGTCGACGGTTACTTCAGGTGCTGCTCTGAAATCCACAGGCGCCATCTCCGACCAGTTTCCGGCGGGTCTCCGGGTCCTTGTTGTGGACGATGATCCCACGTCTCTCATGATTCTCGAGAAGATGCTTCGAATTTGTCGTTATGAAGTTACCAAATGCAACAGGGCAGAGATAGCACTCTCACTTCTGCGAGAGAAAAAAAATGGGTTTGACATTGTTATTAGTGATGTGCATATGCCAAACATGGATGGATTTAAATTGTTAGAGCACATTGGCTTGGAAATGGACCTCCCTGTTATTATAATATCTGCAGATGATGATAACAATGTTATTATGAAAGGTGTAACGTACGACGCCTGTGATTACTTAATTAAACCTATTCGCATAGAAGTTTTTAAGAACATATGGCAGCACATTATTCGGAAGAGAATGAATGAATGGAGAGATATTGAGCTGCCAGAGAGCGCTGAAGAAGGAGATCGACAGCAGAAGGTATCGGATGAATGCAACTGGAGGAGCTCAAAGGAGAGGAGGGATGAGGAAGAGGAAGCAAACAAAAGAGATGACACTAAAACTTTGAAGAAGCCAATAGTTGTTTGGTCTGTTGTGCTCCATCAACGGTTTGTAGCTGTTGTTAATCAACTGGGAATTAATAAGGCTGTACCCAAAAAGATTCTTGAATTGATGAATGTTCCTGGACTCACCAGAGAAAATATAGCCAGCCACCTTCAGAAATACCGTTTGTACCTCAGAAGGTTGAGTGGGATTTCTCAGCATCAGAGTTACATGAACAATTCTCTCATAAATCCTCATGATGCTGGATTTGGGACAATGTTTTCAAGTAATGGAATTGATCTTCGAACTCTTGCAACTGCTGGCCAACTCCCAGTACAAAGTTTAGCCACACTTCAAGCAGCAGGACACATGCTAGGCAAAAAAACCAGTCCTCATCTTTTGAGACTCCCAGCATCTTTGAGATAG 1008 0.4286 MNLSNGSGSMSTVTSGAALKSTGAISDQFPAGLRVLVVDDDPTSLMILEKMLRICRYEVTKCNRAEIALSLLREKKNGFDIVISDVHMPNMDGFKLLEHIGLEMDLPVIIISADDDNNVIMKGVTYDACDYLIKPIRIEVFKNIWQHIIRKRMNEWRDIELPESAEEGDRQQKVSDECNWRSSKERRDEEEEANKRDDTKTLKKPIVVWSVVLHQRFVAVVNQLGINKAVPKKILELMNVPGLTRENIASHLQKYRLYLRRLSGISQHQSYMNNSLINPHDAGFGTMFSSNGIDLRTLATAGQLPVQSLATLQAAGHMLGKKTSPHLLRLPASLR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151353g00001 335 Pfam Response regulator receiver domain 35 141 IPR001789 GO:0000160
Stsc151353g00001 335 SMART REC_2 33 145 IPR001789 GO:0000160
Stsc151353g00001 335 MobiDBLite consensus disorder prediction 164 197 - -
Stsc151353g00001 335 CDD REC_typeB_ARR-like 35 149 - -
Stsc151353g00001 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 260 IPR017930 -
Stsc151353g00001 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Stsc151353g00001 335 SUPERFAMILY CheY-like 32 157 IPR011006 -
Stsc151353g00001 335 Gene3D - 33 166 - -
Stsc151353g00001 335 Gene3D - 201 263 - -
Stsc151353g00001 335 PIRSF RR_ARR_type-B 10 333 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc151353g00001 335 FunFam Two-component response regulator 33 170 - -
Stsc151353g00001 335 FunFam Two-component response regulator 200 263 - -
Stsc151353g00001 335 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Stsc151353g00001 335 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 273 IPR045279 GO:0009736
Stsc151353g00001 335 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Stsc151353g00001 335 Pfam Myb-like DNA-binding domain 209 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151353g00001 Stsc-Chr151353 6509 9105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151353g00001 67 316 Response Regulator Gene Family AT3G16857 61.290 6.16e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc151353g00001 Response_reg 9.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151353g00001 - K14491 gmx:100814930 488.804