Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151352g00005 ATGTTCCCATCATCATCACACACTAGTAACCGTCTAGATCACCACATCATGCTGCACCACCACCACCATATCCCTATCCCCTCTCTGCCTATGCCTATGCCGCCACTTCCATCATCAACAAGATGGAAACCTACAATTGAGGTAGCGCCTAACTGCCCTCGCTGCGCTTCAACCAACACCAAATTCTGTTACTACAACAACTACAGCCTCTCCCAGCCTAGATATTTTTGCAAGGCCTGCCGCCGATACTGGACTAAAGGCGGTTCCCTCCGTAACGTCCCTGTCGGCGGTGGATGCCGCAAGAATCGCCGCTCCAAGCCCGCCAGGCACCAAACTGAACACCAACAACAACACCGCTGCTCCACAAATTCTGATGAAGGAGAGTACTCATCTTCTGCTGACGGTGACGCCGGTGGTGGTGCTGATCAACACTCATCATCGTCACGTGAAATAGACATGGCGGTTGTGTTCGCCAACTTCTTGAACCAAACACCTATCGGCGGTGAGGATCACGGTGGATCGTCTTCCTCGAGCGGTGAGACTGAGAAAAACTTGGATGAAACTGTTCCTGTTGTAACGGAGTCTCAAGAACATGATGATTTAGGAGCTTTATGCGCGGACGTGGAGCCTTCTTCGTTTGAACAAGAATTGAGTCTGATGAGTGGGATCGAGTTGGATGCGTTTGATGATGTGGTCCATCATGTGTGGTCTCATCACCATCATGATCATGATCATGATCATCATGATGGTGTTGCTACATGGCAACCACCATCACTACCACTACCACTACCACCACCACCAACAACATCATCAATGATGCATCAGATGCAGATGGATGAGTTGGAATTCGATGATGAGTTGTTGATGATGCCATCTTCCATGAACTTAATGAGTGACAGTTCTTGGAACACCAATAATTGGAGTTCCTTTGATCTTTCCACTATCGAAGGCCTTAATCAATAA 963 0.4839 MFPSSSHTSNRLDHHIMLHHHHHIPIPSLPMPMPPLPSSTRWKPTIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRSKPARHQTEHQQQHRCSTNSDEGEYSSSADGDAGGGADQHSSSSREIDMAVVFANFLNQTPIGGEDHGGSSSSSGETEKNLDETVPVVTESQEHDDLGALCADVEPSSFEQELSLMSGIELDAFDDVVHHVWSHHHHDHDHDHHDGVATWQPPSLPLPLPPPPTTSSMMHQMQMDELEFDDELLMMPSSMNLMSDSSWNTNNWSSFDLSTIEGLNQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151352g00005 320 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Stsc151352g00005 320 MobiDBLite consensus disorder prediction 168 187 - -
Stsc151352g00005 320 Pfam Dof domain, zinc finger 50 104 IPR003851 GO:0003677|GO:0006355
Stsc151352g00005 320 MobiDBLite consensus disorder prediction 163 187 - -
Stsc151352g00005 320 MobiDBLite consensus disorder prediction 94 148 - -
Stsc151352g00005 320 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Stsc151352g00005 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 194 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151352g00005 Stsc-Chr151352 35697 36920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151352g00005 19 178 C2C2-Dof Transcription Factor Family AT1G21340 45.509 9.64e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151352g00005 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151352g00005 - - adu:107460580 300.827