Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151350g00003 ATGGAGTCCAGCGGCGGCGGCGTTACGGTGGTCGGATCAGATGCTCCGTCGGAATATCAGATAGCTCCGAGGACAGAAAATCCTTCTCTGGCAGGTGGATCGGGGGCGCCAATCCCTACCCCAAATCCGACGAATCAAGGCGGTGCTCCGCCGCATCCTCCGCCACACACGGCGGAGATGACATCTTCTCCGGCAACTATGCAGATGGAGAAGGAGAAGAAGAAGAGGGGGCGACCGAGGAAGTACGGTCCAGACGGGTCAGTGGTGGCGCTGTCCACAAAGCCGATATCGTCATCGGCGCCTTTGGCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGACAAAGCGCGGGAAGGTGAAGCCAGCTGGCACGGTGAGCAGAGGCAAGTTTGAGGTTGAGAATTTAGCTGAATGGGTTCCATGCTCGGTTGGTGCTAATTTCATACCCCATCTCATCAATATTAATCCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCCCAGCAAGGCCCTCGAGCTATATGCATTTTGTCAGCCAACGGTGTCATATCAAGTGTCACACTTCGTCAGCCTGATTCTTCCGGTGGCACATTGACGTATGAGGGACGTTTCGAAATTCTGTCTCTAAGTGGCTCATTCACGCCAAGTGAGACCGGCGGAACACGAAGCAGATCGGGTGGCATGAGTGTCTCTTTATCAGGTCCGGATGGACGAGTTATAGGCGGTGGTGTAGCTGGTCTATTGGTGGCTGCAGGTCCTGTGCAGGTAGTGGTTGGAAGTTTTCTAGCAGGGAACCAACATGAGCACAAGGCAAAAAAACAGAAAATTGATATTATAGCACCAACTGTGACGCCAGCTCCGGTTGTTCCTGTCTCAACGGCCGCAACCGCCGATCCAGTTGCTATTCTGCAATCGCAGGCTTCCTTCCGTGGAGATAGTTGGTCTGCTGTGCCTGCGGATGTGAACAAGAACAAGTCGGCCGATATTAATGTGTCGCTTCCCGGAGGGTAA 1014 0.5355 MESSGGGVTVVGSDAPSEYQIAPRTENPSLAGGSGAPIPTPNPTNQGGAPPHPPPHTAEMTSSPATMQMEKEKKKRGRPRKYGPDGSVVALSTKPISSSAPLALPPVIDFSAETKRGKVKPAGTVSRGKFEVENLAEWVPCSVGANFIPHLININPGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSETGGTRSRSGGMSVSLSGPDGRVIGGGVAGLLVAAGPVQVVVGSFLAGNQHEHKAKKQKIDIIAPTVTPAPVVPVSTAATADPVAILQSQASFRGDSWSAVPADVNKNKSADINVSLPGG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151350g00003 337 MobiDBLite consensus disorder prediction 43 58 - -
Stsc151350g00003 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 262 IPR005175 -
Stsc151350g00003 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 305 IPR039605 GO:0003680
Stsc151350g00003 337 ProSiteProfiles PPC domain profile profile. 144 283 IPR005175 -
Stsc151350g00003 337 CDD DUF296 149 262 IPR005175 -
Stsc151350g00003 337 Gene3D - 149 281 - -
Stsc151350g00003 337 FunFam AT-hook motif nuclear-localized protein 1-like 149 279 - -
Stsc151350g00003 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 268 - -
Stsc151350g00003 337 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151350g00003 Stsc-Chr151350 20099 24915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151350g00003 1 334 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.143 4.37e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151350g00003 - - gmx:100801730 386.726