Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151345g00004 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCACTCACAGAAGCCGAAAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCTGCAGCCATTGAACTCAAGGAAAAGGGTAACGCGTTTGTGAAGAAGGGTAAGAAGCATTACTCTGAAGCAATTGATTGCTACACAAGGGCAATCAATCAGAAAGCATTGAATGATTCTGAGAGCTCTCTTCTTTTTTCCAACAGAGCTCATGTCAATTTGCTTCTTGGCAACCATAGGCGTGCTCTCTCTGATGCTCAACAAGCTCTCAATTTGTCCCCTTCCAACATAAAGGCAATTTATAGAGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGACTATTGCCGAAAGGGTCTTCAGTTGGACCCCAATAACAAGGAACTTAAGAGGCTTGACCAACAGATTCATACGAAGATATCTGAGACTGAGAAGCGTGATGCTGAAGTCTCCAAAGCCATAAAGGAGGCAGAAGAACTTGTGTCTGCAATAGAAAATAGAGGCTTGAAGGTTGGAAAGGCAATGTATCAGGAACTCACCGGGTTAAAGAAACCGGTGTTAGACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTCTACGCAGAGCCTTCAAACATGTTTTCAGCAGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGAATTTGTTGAATTATACTATGAGGCCAGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCGTCATTTTTTATTAGAGGGAACAGCAGCTTCATATGTTGGAGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACCAAGTGCAGGCTCCCCGAAATGGATCAAAGTAAATGAAAAGAAAACACTCCACGATATCCTCAAAGAGCCTAATTTCATAATCCCCGGAATCCCAGTGTTCTATGTTGTTTCCAAGCAATCCAACTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1017 0.4218 MALWMEKGSEPLTEAEKADLEAIAAIKESAAIELKEKGNAFVKKGKKHYSEAIDCYTRAINQKALNDSESSLLFSNRAHVNLLLGNHRRALSDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDYCRKGLQLDPNNKELKRLDQQIHTKISETEKRDAEVSKAIKEAEELVSAIENRGLKVGKAMYQELTGLKKPVLDKNNILHWPVLLLYAEPSNMFSADQPLPWDVENNYKREFVELYYEASSGVRLSKEKLRHFLLEGTAASYVGDEEKDAVEDFKPSAGSPKWIKVNEKKTLHDILKEPNFIIPGIPVFYVVSKQSNFYSKFKSGKWAPPSI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151345g00004 338 CDD CTWD_Cns1-like 170 330 - -
Stsc151345g00004 338 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Stsc151345g00004 338 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 335 - -
Stsc151345g00004 338 SMART tpr_5 31 66 IPR019734 GO:0005515
Stsc151345g00004 338 SMART tpr_5 105 138 IPR019734 GO:0005515
Stsc151345g00004 338 SMART tpr_5 71 104 IPR019734 GO:0005515
Stsc151345g00004 338 SUPERFAMILY TPR-like 22 159 IPR011990 GO:0005515
Stsc151345g00004 338 Coils Coil 152 172 - -
Stsc151345g00004 338 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Stsc151345g00004 338 Gene3D Tetratricopeptide repeat domain 24 183 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151345g00004 Stsc-Chr151345 20986 25184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151345g00004 30 160 Calmodulin-binding Proteins AT3G25230 30.282 1.03e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151345g00004 K24927 - gmx:100783179 517.309