Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151345g00003 ATGGCTTCAAAATTTGAGGGTGGAGCTTATCTCTCTTCCTTTGTTGATGTTGTTTTGAACAAACTGTCTTCACTTGATGTCAACTCAACTCCAATGGCAAGGAACCTAGCTGATCAGAACTTGGTTCAGAGTCTGGAGAATAGTCTTCTTGACGTTGGACTTGTGCTTGATGATGCTGAGCAGAAGCAGATCAAAAATCAACATGTGAAGAAGTGGCTTATTGATCTCCAAGATGCTCTCTATATGGCTGATGACTTGCTCGATGAACTCTGCACTAAAGCTGCCACTGCCGCTCCCGCTCCAGGTAATCCTTCTTCCTGGTGTAGCTCCCTTGTTGATTCAATGGTGGAAGGTAGTGATGATGATGAGAACATGCGAGCCATAGTTGTTAAACTAGAGTCTATTGTTCAAAAGAAAAATGCTCTTTGTCTAAAAGAAGAGTCTCTCAAACATCCGAAGGACATGTCATGGAGAATTCAATCATCTCTGCCTGAAAGTTCTGAGATATTTGGAAGGGATAAGGACAAGGAGGCCATCATAGAATTGTTGTTTGATGATACTCGTGATGCTAACATGTCTGTGATCCCCATTGAGGGTATGGGCGGAGTTGGAAAAACTACCTTAGCTCGGTTGGTTTACAATGATGCTAGAGTGGAGGGGAATTTTGACACTAGAGCTTGGGTGTGTGTTTCCGACCAATTTGACATTTTTAAGGTGACAAAGACCTTAATAAATGCAACAGGTGGTAGTTCTTGTAATGAGGATGATTTAAATTTACTTCAAACAGAGTTGAAGAATAAGTTGATGGGGAAGAAATTCTTGATTGTTTTGGATGATCTATGGAGTGATACTTCCAGACACTGGGAAACTCTTCAAAAACCTTTTCAATGTGGAAAAAAGGGGAGCATGGTTCTTGTAACAACCAGAGACAATAATGTTGCTAATGTAGTGAAAACTGTTCCAGCTCACAGGCTTGGTTTATTGTCAGAGGAAGATTCTTGGTCACTTTTTGTGAAATGTGCATATCTTTCTATTGAATCGGAGGAGTATTCAACTCTGGAACACGTTGGTCGAGAACTTGTCAAAAAGTGCAAAGGGCTAGCTTTGGCTGTAAAGGCCCTTGGTTCTTTATTACGAACAACAAACAATGACGAAGGGGATTGGGATAGTGTATTGAAAAGTGAACTATGTGAAGGTTTTGAAGATCAGGATGACATGATTATTCCTGCTTTAAGAATCAGCTATCACTATCTTCCTTCTAATCTAAAGCGATGCTTTGTTTATTGTTCTTTGTTTCCAAAAGACTATGAATTTGATAAAGATGAGCTGGTCTTGCTATGGATGGCAGAAGAACTTTTACAACCAAAAAGAAGAAAGAATTTGGAAGAAATTGGTTGTGAATACTTCGATCAATTGGTTGCGAGGTCCTTTTATCAATCCTCAAGTACTGATGACAACTTCTATGTGATTCATGATATCATGCATGACTTGGCAACAATTTATGCTGGAGAATTCTATTTTAGAGCTGAGAAGTTTGAGGAAAATAATAGGATCAGCAATACAACTCGCCATTTATTGTATAACTCAAGAGGAAACTATCCCTTCTCGCTACTTGTGGCAACTTGTAGTAGGGTAAAAGATGTGAGGACATTTCTTGAAATAAATTTGGGTCCAAAGGATCCTTTCAATATGGAAAATGCTCCTCATATCTTTTCATCCCAATTGAACTGCTTAAGGGTTTTGTCATTCAATATGTTTCCTCTTTTTTCATTACCTGATTCAATAGGTGAATTAATTCATTTGCGTTATTTGGATCTCTCATATACAAGTATAGAAACATTGCCAAAGGAATTGTGTAAGTTGTACAATCTCCAGACATTGACATTGAAGTTGCATGGTTGTCATCGGCTAAAGAAACTACCCAACAATATGCAAGATCTTGTAAATTTACATCATCTTAATATTGAAGAAGCTGGTCTTCAAGAGATGCCAAAAGGAATAAGCAAAATGAAGAAGTTGCAGTTCTTAAGTGACTATATTGTTGCCAAGCATGCAGAGAATAATGGAATTGAAGAATTGGGAGCTCTTACAAATATTCAGAAGTCGCTTCGCATTTGCCAATTGGAGAATATCATTGATGGTGATCAGGCTTCGGAGGCAAGAATCGCTGAGAAGAAGAACATTAGGTGTCTAGATTTGACTTCGTCATCGAACGGCAATATGGTTGATTCTCAAGATATACTCAACAATTTAAGGCCTCACACAACGGTCAAACATTTTCAAATTAATTAG 2292 0.3839 MASKFEGGAYLSSFVDVVLNKLSSLDVNSTPMARNLADQNLVQSLENSLLDVGLVLDDAEQKQIKNQHVKKWLIDLQDALYMADDLLDELCTKAATAAPAPGNPSSWCSSLVDSMVEGSDDDENMRAIVVKLESIVQKKNALCLKEESLKHPKDMSWRIQSSLPESSEIFGRDKDKEAIIELLFDDTRDANMSVIPIEGMGGVGKTTLARLVYNDARVEGNFDTRAWVCVSDQFDIFKVTKTLINATGGSSCNEDDLNLLQTELKNKLMGKKFLIVLDDLWSDTSRHWETLQKPFQCGKKGSMVLVTTRDNNVANVVKTVPAHRLGLLSEEDSWSLFVKCAYLSIESEEYSTLEHVGRELVKKCKGLALAVKALGSLLRTTNNDEGDWDSVLKSELCEGFEDQDDMIIPALRISYHYLPSNLKRCFVYCSLFPKDYEFDKDELVLLWMAEELLQPKRRKNLEEIGCEYFDQLVARSFYQSSSTDDNFYVIHDIMHDLATIYAGEFYFRAEKFEENNRISNTTRHLLYNSRGNYPFSLLVATCSRVKDVRTFLEINLGPKDPFNMENAPHIFSSQLNCLRVLSFNMFPLFSLPDSIGELIHLRYLDLSYTSIETLPKELCKLYNLQTLTLKLHGCHRLKKLPNNMQDLVNLHHLNIEEAGLQEMPKGISKMKKLQFLSDYIVAKHAENNGIEELGALTNIQKSLRICQLENIIDGDQASEARIAEKKNIRCLDLTSSSNGNMVDSQDILNNLRPHTTVKHFQIN 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151345g00003 763 Gene3D - 414 500 IPR036388 -
Stsc151345g00003 763 FunFam Probable disease resistance protein At1g63360 415 500 - -
Stsc151345g00003 763 Gene3D - 153 321 IPR027417 -
Stsc151345g00003 763 Pfam NB-ARC domain 173 415 IPR002182 GO:0043531
Stsc151345g00003 763 PANTHER DISEASE RESISTANCE PROTEIN RP 46 755 IPR044974 GO:0006952
Stsc151345g00003 763 FunFam Probable disease resistance protein At1g61300 154 321 - -
Stsc151345g00003 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 429 IPR027417 -
Stsc151345g00003 763 PRINTS Disease resistance protein signature 596 612 - -
Stsc151345g00003 763 PRINTS Disease resistance protein signature 194 209 - -
Stsc151345g00003 763 PRINTS Disease resistance protein signature 267 281 - -
Stsc151345g00003 763 PRINTS Disease resistance protein signature 364 378 - -
Stsc151345g00003 763 Gene3D - 15 120 - -
Stsc151345g00003 763 Gene3D Ribonuclease Inhibitor 544 763 IPR032675 -
Stsc151345g00003 763 SUPERFAMILY L domain-like 490 738 - -
Stsc151345g00003 763 Gene3D - 327 413 IPR042197 -
Stsc151345g00003 763 Pfam Rx N-terminal domain 14 97 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151345g00003 Stsc-Chr151345 15134 17425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151345g00003 191 669 WRKY Transcription Factor Family AT5G45050 21.541 5.61e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151345g00003 - - aip:107625739 1050.04