Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151343g00004 ATGAATTATGGAATGAGGAAGAAGCCATTCTTCTTCGTTTTACTTCTACTCTCGTGTTTTCTACCACCGCACCGTGTTCAATGTGCGGACCCGCCGCCGGTGCCAGCGTTTTACACGGAAGAAATCTACAAGGAGATTGAAGGTCTCACCTCAGCTTTAACCAGAGATATCAAGACATCCCTAGATTTCTGCATTAAGAATCCAAAAAAAGATTGGGAGGAAGCGTTTAATTTCAAGGGCAAGTTGGATTTCGTCGATGGTTGTGTTAAGCAAAAAGGGGATTTCAGGGATCGGATGTGCACAACAGCTGAAATAAGGTACTACTTCAGGAGTTTATTCCAAGGGGGTTCATCAGATGGGAATTATGTGAAACCAAACAGGAATTGCAACTTGACTTCATGGGTTCCTGGTTGTGAACCTGGTTGGAGTTGTAGTGCTGATGAGCCTATTGATCTCAAGAAGGATAACAAGGATGACATTCCTTTAAGGGTTTCAAATTCCCAGCCTTGTTGTGAGGGCTTCTTCTGTCCTGAGGGCTTGACTTGCATGATAACTTGCCCTCTTGGTTCTTACTGTCCACTCTCAACACTAGATGCAGCAAATGGAGTATGTAACCCATATGGTTACAAGATACCTGCAGGAGACAAGAATCATACTTGTGGTAGTGCTGATACTTGGAGTAGTGCTGTCAACAATACTAACATATTCTGTGAAGCAGGACATTATTGCCCAACAACAACCCAAAAGTCTGTTTGCAATAAGGGATATTATTGCAGGGCGGGGTCAACTGATCCAATTGCATGCTCCAAGTTGAGTACCTGTGATCCAGCATCTGAAAGCCAAACAATGCATGCTTATAGTGCTTTGCTTATTGTGGCTTTGAGTACACTCCTAGTCTTCATTTATAACTGTTCTGATCAAGTTCTTGCCACTCGAGAAAGAAGGCAAGCGAAATCCAGAGAACGTGCAGCAAAGCATGTTAGAGAAACGGTGCAAGCACGTGAAAGGTGGAAGATGGCAAAAGACATTGCCAAGAAGCGCACAATGGAGTCTTTGACACGAACTTTCTCGCGAAAGAAGTCACAGAAGATGCAGGATCTTCCAAATACCATGGCAAATGTGGCCAGCAAAAAGGAACCTAGCAACCTCTCCAAGATGATGGATTCCATTGAGAATGATCCCAACAGTCATGAAGGATTCGACGTGCAGATTGGAGATAAGAATGTCAAAAAGCAGCAGCTGGGGACAAAGGGAAAGAATCTGCATACACATAGTCAGATTTTGAGGTATGCTTATGGCCAGATTGAGAAGGAGAAAGCTCAGCAAGAGAAGAACTCTAACTTGACATTCTCAGGAGTGATCTCGATGGCCGCCGAACAAGGAGTGGAAGTGAGAAAAAGGCCTGTGATTGAGATAGCTTTCAAGGACATAACTCTCACTTTGAAAGGGAAGAACAAGCATCTCCTGAGGTGTGTGTATGGCAAGTTCATGCCAGGTCGAATTTCAGCTGTGATGGGACCCTCAGGGGCTGGCAAAACCACATTCCTTTCAGCTTTGGTAGGAAAAGCAAGAGGGTGCACTGTAACAGGTGAAATTCTGATTAATGGAAAAAATGACTCCATTCACTGTTATAAGAAAATCACAGGTTTTGTGCCACAAGATGATATCGTCCATGGAAACTTGACAGTGGAGGAAAATCTTCGTTTTAGTGCAAGATGCAGACTATCTGCGGACTTGCCAAAAGCAGATAAGGTTTTGATTGTTGAGAGGGTAATTGAGTCCTTGGGACTTCAGCCAGTGAGGGATTCTCTAGTTGGGACAGTAGAGAAGCGAGGCATATCCGGAGGGCAGAGAAAACGTGTAAATGTAGGCCTGGAGATGGTGATGGAGCCTTCCTTGTTAATCCTAGATGAGCCTACAACTGGCCTTGACAGTGCATCTTCCAGTTTGCTGCTTAAGGCTCTTCGACGCGAAGCTCTCGAAGGAGTTAACATTTGCATGGTGCTTCATCAACCAAGCTATACTTTGTTTAGAATGTTTGATGATATAGTGTTTCTAGCCAAAGGTGGTCTTACTGCATACCATGGTCCTGTGAAAAATGTAGAAGAATACTTTGCTGGTATTGGGATTCCTGTACCAGACCGTGTGAATCCTCCTGACCATTTCATTGACATTCTAGAAGGTTTGGTGAAACCGAGTGCTCCGGGTGTTACTCATGAACAACTTCCTGTCAGATGGATGCTTCACAATGGATATGCAGTGCCACCAGATATGCTTCATTTTGTTGATCAAATCGCAGCTGCTTCTGGTGGCGCACCTGTGGTTCCTACAAGTCAGTCAATAAAGGTTTCTGAGCATGATCAATCTTTTTTCTCTGAGTTTTGGGAGGATTTGAAGGATAATATTCAGAGCCAACTAGATCGCATGGAGGCAATCTTCATGAAGTCGAAGGACTTATCGAACCGGAGAACTCCTAGTATAATCAGGCAGTACAGATATTTTATCGGCCGGGTGGGTAAGCAGCGGTTGAGAGAGGCTAAATTACAAGCTGTAGACTATCTTCTTTTACTAGTTGCTGGTGCTATCTTGGGAATGCTCACTAAAGTGAATGATAATTCATTTGGAGCCCTTGGTTATACATTTACAATCATTGCTGTCTCTCTACTTTGCAAGATTGGTGCCCTGAGATCTTTTTCTAATGATAAGTTAACATACTGGAGGGAGAGTGCAGCTGGGATCAGCAGTCTGGCTCATTTTCTATCTAAAGACACAGTTGATCTTTTCAACACAATCATCAAACCTCTTGTTTTTCTATCCATGTTCTACTTTTTCAGCAATCCGAGGTCAAGCTTTGCAAGTAATTATGCAGTGTTGCTTTGTTTGGTGTACTGTGTGACTGGCATAGCATATATATTCGCCATCCACTTCGCCTACAGTCTTGCACAGCTGTGGTCAGTGCTGCTCCCTGTGGTTATGACCCTCATTGCAAAACAAAACGACAATACGATACTCATGCACATCATAATGAAAGTTTGCTACCCAAGATGGGCTTTGGAGGCCTTTGTCATTGCAAATGCTGAAAGGTACACTGGGGTGTGGCTGATAACACGTTGCGGTTCACTGATGGCGAGTGGGTATAATCTTGGGGACTGGTCCTTTTGTCTGATTGCCCTTGTTGTTTATGGCATTTTTTCCAGAATTGTGGCCTTCTTTTGTCTTGTTATTTCCCAAAAGAGGTGA 3240 0.437 MNYGMRKKPFFFVLLLLSCFLPPHRVQCADPPPVPAFYTEEIYKEIEGLTSALTRDIKTSLDFCIKNPKKDWEEAFNFKGKLDFVDGCVKQKGDFRDRMCTTAEIRYYFRSLFQGGSSDGNYVKPNRNCNLTSWVPGCEPGWSCSADEPIDLKKDNKDDIPLRVSNSQPCCEGFFCPEGLTCMITCPLGSYCPLSTLDAANGVCNPYGYKIPAGDKNHTCGSADTWSSAVNNTNIFCEAGHYCPTTTQKSVCNKGYYCRAGSTDPIACSKLSTCDPASESQTMHAYSALLIVALSTLLVFIYNCSDQVLATRERRQAKSRERAAKHVRETVQARERWKMAKDIAKKRTMESLTRTFSRKKSQKMQDLPNTMANVASKKEPSNLSKMMDSIENDPNSHEGFDVQIGDKNVKKQQLGTKGKNLHTHSQILRYAYGQIEKEKAQQEKNSNLTFSGVISMAAEQGVEVRKRPVIEIAFKDITLTLKGKNKHLLRCVYGKFMPGRISAVMGPSGAGKTTFLSALVGKARGCTVTGEILINGKNDSIHCYKKITGFVPQDDIVHGNLTVEENLRFSARCRLSADLPKADKVLIVERVIESLGLQPVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKNVEEYFAGIGIPVPDRVNPPDHFIDILEGLVKPSAPGVTHEQLPVRWMLHNGYAVPPDMLHFVDQIAAASGGAPVVPTSQSIKVSEHDQSFFSEFWEDLKDNIQSQLDRMEAIFMKSKDLSNRRTPSIIRQYRYFIGRVGKQRLREAKLQAVDYLLLLVAGAILGMLTKVNDNSFGALGYTFTIIAVSLLCKIGALRSFSNDKLTYWRESAAGISSLAHFLSKDTVDLFNTIIKPLVFLSMFYFFSNPRSSFASNYAVLLCLVYCVTGIAYIFAIHFAYSLAQLWSVLLPVVMTLIAKQNDNTILMHIIMKVCYPRWALEAFVIANAERYTGVWLITRCGSLMASGYNLGDWSFCLIALVVYGIFSRIVAFFCLVISQKR 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151343g00004 1079 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Stsc151343g00004 1079 Gene3D - 470 706 IPR027417 -
Stsc151343g00004 1079 SMART AAA_5 498 690 IPR003593 GO:0016887
Stsc151343g00004 1079 Pfam ABC-2 type transporter 670 1078 IPR043926 GO:0140359
Stsc151343g00004 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 695 IPR027417 -
Stsc151343g00004 1079 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 713 IPR003439 GO:0005524
Stsc151343g00004 1079 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 240 1067 - -
Stsc151343g00004 1079 FunFam ABC transporter G family member 24 466 708 - -
Stsc151343g00004 1079 Pfam ABC transporter 494 640 IPR003439 GO:0005524
Stsc151343g00004 1079 CDD ABCG_EPDR 470 696 - -
Stsc151343g00004 1079 ProSitePatterns ABC transporters family signature. 613 627 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151343g00004 Stsc-Chr151343 24333 30698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151343g00004 499 692 Calmodulin-binding Proteins AT2G36910 28.713 1.90e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151343g00004 - - lang:109333797 1648.64