Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151343g00003 ATGGTGTGCTTTCCATTCCACTATGGTGGAGAGAAGAAGGATGAAACAAAAGGCTCGAAATCAATGTCAGGTCGATCAGACTGCTCTACTTATGTGGAGGCCGAGGTTAGAAGATCAGGTTCTGAGTTGAATTCTCAGGATGTCTCGGACAATGGCAGCTCGGATTCCCTCAGGAGGAATTCCACTCCTAGTTTGTCCCAAAGACCTAGCAACCTTAGAGTGTTTACAGTATCCGAACTCAAATCGGCCACAAAGAATTTCAGCCGCTCTGTTATGCTCGGAGAGGGCGGGTTCGGGTGTGTCTACTATGCGTTGATCAAGAGTTTAGAGGATCCATCCAGAAAAATTCAAGTTGCTGTTAAACAACTTAGTAAAAGGGGAATGCAGGGGCATAGAGAATGGGTTACAGAAGTGAATGTTCTTGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATACTGTGCCGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTGTCTCATCGATCCGAGACTCCTCTCTCGTGGAGTAGGAGAATGAAAATAGCCCAAGATGCAGCTCGCGGTTTAACATACCTACACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCATCGAATATCCTTCTCGATGAGAAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGATTGGGACCATCGGATGGACTAACTCATGTCTCCACGGCGGTTGTAGGAACAATGGGATATGCAGCTCCCGAATATGTTCAAACCGGACGTCTGACATCAAAGAACGATGTGTGGAGCTACGGCGTCTTCCTTTATGAACTCATTACTGGCAGGCGCCCTATCGATCGAAATCGCCCCAAGGGTGAGCAGAAGATGTTGGAATGGATAAGGCCATACCTAGCAGACGCGAAGAAATTTCAACTAATATTGGATCCGAGACTCGACAAGAAGCAAGTCTTCAAGCCAGCCCAGAGACTCGCTCTAATAGCTAACCGATGCCTGGTCAGAAACCCAAAGAATCGCCCGAAAATGAGCGAGGTGTTGCAAATGGTGAATGGTTTAGTAGAGTCCTCACCTGGTGCTAGTCCACAGGCACCCTTGAAGACAGCCAAAGCTTCCAATGAGAACGAAATACACAAGAAGAAAAGGACCATGGATATGAAATCTGGTGAAAGCAATTGGTTTGTTAGGATCTTTAGACAAAAGCTGGTAAACTCATGTTGA 1275 0.4541 MVCFPFHYGGEKKDETKGSKSMSGRSDCSTYVEAEVRRSGSELNSQDVSDNGSSDSLRRNSTPSLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYYALIKSLEDPSRKIQVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLSWSRRMKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEKWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPKGEQKMLEWIRPYLADAKKFQLILDPRLDKKQVFKPAQRLALIANRCLVRNPKNRPKMSEVLQMVNGLVESSPGASPQAPLKTAKASNENEIHKKKRTMDMKSGESNWFVRIFRQKLVNSC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151343g00003 424 Gene3D Transferase(Phosphotransferase) domain 1 173 391 - -
Stsc151343g00003 424 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
Stsc151343g00003 424 MobiDBLite consensus disorder prediction 11 68 - -
Stsc151343g00003 424 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151343g00003 424 Pfam Protein kinase domain 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151343g00003 424 FunFam Serine/threonine-protein kinase PCRK2 173 381 - -
Stsc151343g00003 424 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
Stsc151343g00003 424 SUPERFAMILY Protein kinase-like (PK-like) 61 368 IPR011009 -
Stsc151343g00003 424 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Stsc151343g00003 424 CDD STKc_IRAK 93 371 - -
Stsc151343g00003 424 MobiDBLite consensus disorder prediction 39 68 - -
Stsc151343g00003 424 PANTHER OS01G0588500 PROTEIN-RELATED 52 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151343g00003 Stsc-Chr151343 18187 21723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151343g00003 1 383 Glycoside Hydrolase AT3G07070 40.051 1.81e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc151343g00003 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151343g00003 - - gsj:114400704 728.398