Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151342g00004 ATGGCTGCTCCTGGAACACTGATCCCAGCTGATATTTTAAGCACAAAAGATAGTGCCTTCAAATCTTACAATCCTAACGTTGTGCCAAGTTTACCTTCCTCTAATGAAACTGGGTCTTCTTATTCAAGACCTATTCCTGCTGATGAAGGTAGTAGTCAAAATTCTGTGATAAAAAATCATTCACCACAATGGAATGGAAAATCATATTTTGAAAAGCCAGTGTATGCAGCACCAAACTTGGGTTTCAACAAAGACACTGGTGTTGGTCCTTCTAAGATGCCTAATAAAAGAAATACGGAAATTTCACCACCATACTCTGGTGCTTCTCTGTACAAAGGGACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTAAACGTAAATGTAGTACCATATGCTCAGAACAACCCCAATGATTCTCACAGCCTTTTTGCAGATCTTAATCCATTTCAGATAAAAGGAACTGGGAAGACCTCTGTGCATAATATACCTGTTGAAAATAAAGCTCCTGAGCTCCAGAGTACGAGAAAAAATACTGTTCCTGGGATGCCCCCCGTACCATGGAAGAATCGTTATGCTTACAATGAAGCTCCAAGGAAAAATAATCGTAATCCAAATGATTACAGTCCTACATTATTAGTTTCTAATAATTCTTCTGTGTCTGAAAAGATTAATGTCAATGGTAGAAAATCACCATACAGTTCAAATGTAAATAATAACATAAATGTTCAAACTTCACCTCAAGTTATTGGTTCCATGATAACACCTGTAGCAATTGAGCAGAACTGGACTCAGGATCTTAATGCTGATCACAACCGGGGAGATATGGAACATTCTCAGAATTTAATGTCGGAACCGCTTAATAAAGAACATGAAAACAGTGAAATCAGAGATCTTGACTGGAGGATGACACATGACAGATTCATGGGAAGCAATTTGAAATTAAAGGAACCAGAGTCTCCTAGTTCATCTGTTGATTCCATTTCAAACAGGCCCAGGGTTGATCCAAATCCACCAATGTTGGATGATGTAGATGTTGGCGAATGCGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGCGAGGTATACCATGCAGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGACCAGGATTTTTCAGGTGCTGCCTTGTCCGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACCCGTCCTCCCAATCTTTCAATCATTTCAGAGTTTCTTCCGAGAGGAAGCTTGTACCGAATTCTTCATCGTCCTAATTGTCAGATTGATGAGAAACGAAGGATAAAAATGGCTCTGGATGTGGCCAGGGGCATGAATTGCTTACACACCAGCACACCAACTATTGTTCACCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGTTTGTCGCGCTTGAAGCACAACACATTTCTATCATCCAAGTCAACTGCTGGAACGCCTGAATGGATGGCTCCTGAAGTTCTTCGCAATGAACCCTCAAATGAGAAGTGTGATGTTTACAGTTTTGGGGTCATCCTATGGGAGCTTGCGACTCTAAGGTTGCCATGGAGCGGAATGAATCCTATGCAAGTTGTGGGTGCTGTAGGTTTCCAGAACCGCAGACTCGATATTCCCAAGGAAGTTGATCCTTTAGTTGGAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGTCCCTCTTTTGCACAACTCACAGTGGCACTAAAATCCCTTCAGCGTCTAGTTATCCCATCTCATCAAGACCAGGTAGCATCACCTTTGCCGCAGGAGATTTCTGTAAATTCTACCCCCTGA 1917 0.4142 MAAPGTLIPADILSTKDSAFKSYNPNVVPSLPSSNETGSSYSRPIPADEGSSQNSVIKNHSPQWNGKSYFEKPVYAAPNLGFNKDTGVGPSKMPNKRNTEISPPYSGASLYKGTLGMNAVGDGTRLNVNVVPYAQNNPNDSHSLFADLNPFQIKGTGKTSVHNIPVENKAPELQSTRKNTVPGMPPVPWKNRYAYNEAPRKNNRNPNDYSPTLLVSNNSSVSEKINVNGRKSPYSSNVNNNINVQTSPQVIGSMITPVAIEQNWTQDLNADHNRGDMEHSQNLMSEPLNKEHENSEIRDLDWRMTHDRFMGSNLKLKEPESPSSSVDSISNRPRVDPNPPMLDDVDVGECEIPWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLDIPKEVDPLVGRIIWECWQQDPNLRPSFAQLTVALKSLQRLVIPSHQDQVASPLPQEISVNSTP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 23 60 - -
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 317 332 - -
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 312 341 - -
Stsc151342g00004 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Stsc151342g00004 638 Pfam Protein tyrosine and serine/threonine kinase 358 607 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 Gene3D Transferase(Phosphotransferase) domain 1 436 619 - -
Stsc151342g00004 638 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Stsc151342g00004 638 PRINTS Tyrosine kinase catalytic domain signature 431 444 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 PRINTS Tyrosine kinase catalytic domain signature 580 602 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 PRINTS Tyrosine kinase catalytic domain signature 536 558 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 PRINTS Tyrosine kinase catalytic domain signature 470 488 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 PRINTS Tyrosine kinase catalytic domain signature 517 527 IPR001245 GO:0004672|GO:0006468
Stsc151342g00004 638 CDD STKc_MAP3K-like 363 606 - -
Stsc151342g00004 638 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 216 613 - -
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 168 188 - -
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 273 296 - -
Stsc151342g00004 638 ProSiteProfiles Protein kinase domain profile. 357 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151342g00004 638 MobiDBLite consensus disorder prediction 86 105 - -
Stsc151342g00004 638 FunFam Serine/threonine-protein kinase CTR1 436 619 - -
Stsc151342g00004 638 SMART serkin_6 357 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151342g00004 638 SUPERFAMILY Protein kinase-like (PK-like) 347 628 IPR011009 -
Stsc151342g00004 638 Gene3D Phosphorylase Kinase; domain 1 350 434 - -
Stsc151342g00004 638 FunFam Serine/threonine-protein kinase isoform 1 348 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151342g00004 Stsc-Chr151342 26313 32340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151342g00004 1 593 MAP Kinase Kinase Kinase AT1G08720 53.600 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc151342g00004 PK_Tyr_Ser-Thr 1.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151342g00004 - - aprc:113870732 978.393