Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151341g00010 ATGCTACCAAGGACAAGTGTTGATGGATTTCGTGTTAGTGTGTCAAGTACACCTAGCTGTTCGAGTGGGGGATCGGGACCAGAAGACATTGAATCCCTTGGTGATCTTTATATATGGGGACAAATTTGGGCAGATGTTTCATTTGAAGGCTTTGGGCCTCAGCCCCCTCCCTTGACTGATGTTCTGATTCCTAAGCCCTTAGAGGCAAATATTGTTCTTGATGTTCAACAAATTTCATCTGGTGTCCGGCACATTGCTTTAGTAACAAGGCAAGGTGAGGTTTTCACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGAATCGATAAAGATTTTGGACAACCCCATGTTGTTGAATTCTTGGCTGTTACTAATGTGGATTTTGTTGCATGTGGTGAGAATCATACATGTGCTCTAACTACATCAGATGAGCTATATTCTTGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGCTAGCCATTGGATACCAAAGAGAGTTAGTGGCCCTCTAGAAGGACATCAAGTTATATCTGTTGCTTGTGGCACATGGCATTCAGCATTGGCAACTGCCAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTAGGCCATGGAGATAGAGAGAGTGTGTTATATCCAAAGGAGGTGCAATTATTAAGTGGATTGAGGACTCTAAAGGTTGCATGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTAACACTTCCGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATAAGTACCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCAACATGCGTCTCGTCGCTTATAGAATTAAATTTCCACCAGATAGCATGTGGACATACTATGACAGTTGCCCTCACTACCTCAGGTCATATTTTCACCATGGGAGGCACTGAACATGGTCAACTAGGAAATCCCCTGTCTGATGGAAAAGTACCAATGCTTGTACAAGATAAGTTGGTAGGAGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTAGCTGTCTTGACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACTGATGATAGGAAGGGTCCAACAATAGTGGAAGCTTTGAAAGAAAGGCATGTGAAGAATATTTCATGTGGATCTAAGTTCACAGCTTGCATATGCATCCATAAATGGGTCTCAGGAGTTGATCAATCCAGTTGCACTGCATGTAGGCAACCATTTGGATTTACAAGAAAAAGGCACAATTGTTACAATTGTGGTCTCGTGCATTGCCATGGTTGTAGTTCCAAGAAGGCATTGAGGGCGGCGTTGGCTCCAACGCCTGGAAAACCTCACCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGCAGAGTCCAGTTCTGGTTCCAATTTTAACAGGAGAGCTACTACTCCACCTCGTACTTCCATAGATGGAAGGGAAAGATTTAGCATTGTAGAAACAAGATCTTCGAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTTGTGAAATTGAAAGATGTTGCATTTCCAAGTTCAACAGGTTCAATAATGCAGAATCTTTTGAAGCCTACCATCACTGCCATACCTCCAAGTCCACCACCAACTCCGCCACTCATTTCAAGGCCGGCGTCCCCATACGCAAGAAGGCCTAGCCCTCCGCGTTCCAACGCCGGTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAAACAAATGAGCTTCTGAACCAAGAAGTGTCGAAATTGCAGAAACAAACTCAAAGTTTGAAACAGAGAAGTGACATGAGAGATGTGGAAAATCAGAGGCTTCGCAAACATATTAAGGAAGCTACAACATTGGCTGCAGATGAGTCTTCTAATCATAAAGTAATGGTAGAAATTTTTGAGTCCACCATTATTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGACATTCCAGAAACTGAAAATTTGATAAGTACACTTACTCAAGCTGAAGATTTTCTGAAAGAAAATTCAGCAATGGAAGCATTTTCTGCACCATCAATATCAGAGTCTACTCGACAAAATGCACCTAACAAACCTGCCTCGGATAGTGAGAATTCAAAAATGCAAGATCAAGGTTATGAAGAAAATCAAGAAGTGGCAGCTTCTGACCCACCTCAAGATGAGGGGAATGTCCTTGAAGAAAGAAATGGATCATCTTTATCTGATAATAAAACAACAGTGCAACCACAAAGCTCAGAAAACAATTCAAGATCATTAGAGACGTCAAGGTTGGGAAGAGATGGAGAAACGCAAGTCGTTGAACAATTTGAGCCTGGTGTTTATGTGACACTAGTAGTAAAGCCTAATGGTGCCAAAGTTTTCAAGAGAGTTAGATTCAGCCGGAGAAGGTTTCAAGAGCAACAGGCAGAAGAATGGTGGAGCAGAAACCAAAAAAGGGTGCTTAAGAAATATCATCCACAAGGTAAAAATGAAGCTAGTGCATCATCTAGCACCCAAGCACCCCCTGCTGAAGAAAATATTGAGGCAGCACCTACCTAG 2652 0.4253 MLPRTSVDGFRVSVSSTPSCSSGGSGPEDIESLGDLYIWGQIWADVSFEGFGPQPPPLTDVLIPKPLEANIVLDVQQISSGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDFGQPHVVEFLAVTNVDFVACGENHTCALTTSDELYSWGDGAYNVGLLGHGTDASHWIPKRVSGPLEGHQVISVACGTWHSALATANGKLFTFGDGTFGVLGHGDRESVLYPKEVQLLSGLRTLKVACGVWHTAAIVEVTLPSSSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIELNFHQIACGHTMTVALTTSGHIFTMGGTEHGQLGNPLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTSRSELYTWGKGANGRLGHGDTDDRKGPTIVEALKERHVKNISCGSKFTACICIHKWVSGVDQSSCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNAESSSGSNFNRRATTPPRTSIDGRERFSIVETRSSRTLFPLSRIHKTTTEQVVQVPSLVKLKDVAFPSSTGSIMQNLLKPTITAIPPSPPPTPPLISRPASPYARRPSPPRSNAGGFSRSLIDSLRKTNELLNQEVSKLQKQTQSLKQRSDMRDVENQRLRKHIKEATTLAADESSNHKVMVEIFESTIIQLKQMAEKLPPDIPETENLISTLTQAEDFLKENSAMEAFSAPSISESTRQNAPNKPASDSENSKMQDQGYEENQEVAASDPPQDEGNVLEERNGSSLSDNKTTVQPQSSENNSRSLETSRLGRDGETQVVEQFEPGVYVTLVVKPNGAKVFKRVRFSRRRFQEQQAEEWWSRNQKRVLKKYHPQGKNEASASSSTQAPPAEENIEAAPT 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 312 IPR000408 -
Stsc151341g00010 883 Pfam Transcription factor regulating root and shoot growth via Pin3 801 855 IPR013591 -
Stsc151341g00010 883 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 483 IPR017455 -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 714 747 - -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 860 874 - -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 569 602 - -
Stsc151341g00010 883 FunFam PH, RCC1 and FYVE domains-containing protein 1 5 252 - -
Stsc151341g00010 883 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 714 801 - -
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 199 250 IPR000408 -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 9 26 - -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 1 28 - -
Stsc151341g00010 883 SUPERFAMILY RCC1/BLIP-II 33 418 IPR009091 -
Stsc151341g00010 883 CDD FYVE_like_SF 426 479 - -
Stsc151341g00010 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 494 IPR013083 -
Stsc151341g00010 883 ProSiteProfiles BRX domain profile. 801 856 IPR013591 -
Stsc151341g00010 883 SMART fyve_4 415 484 IPR000306 GO:0046872
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 837 883 - -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 763 792 - -
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 185 201 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 302 320 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 94 110 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 201 215 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 360 381 IPR000408 -
Stsc151341g00010 883 PRINTS Chromosome condensation regulator RCC1 signature 144 160 IPR000408 -
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 143 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 263 309 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 92 140 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 144 194 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 366 413 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 198 247 IPR000408 -
Stsc151341g00010 883 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 198 IPR000408 -
Stsc151341g00010 883 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Stsc151341g00010 883 Gene3D - 20 156 IPR009091 -
Stsc151341g00010 883 Gene3D - 157 418 IPR009091 -
Stsc151341g00010 883 SUPERFAMILY FYVE/PHD zinc finger 417 490 IPR011011 -
Stsc151341g00010 883 Pfam FYVE zinc finger 417 483 IPR000306 GO:0046872
Stsc151341g00010 883 Coils Coil 606 633 - -
Stsc151341g00010 883 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Stsc151341g00010 883 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 669 - -
Stsc151341g00010 883 MobiDBLite consensus disorder prediction 569 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151341g00010 Stsc-Chr151341 50023 53180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151341g00010 795 861 Major Intrinsic Protein MIP AT1G31880 38.806 6.60e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151341g00010 - - ahf:112742992 1483.39