Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151340g00004 ATGCGGTCTGGAAAATTAATTCTCGTGGACTTGGCGGGGTCTGAGAAAGTGGAGAAAACAGGTGCCGAAGGAAGAGTTCTAGAAGAAGCTAAAACCATAAACAAGTCATTGTCTGCTCTTGGGAATGTAATAAGCTCTCTTACATGTGGTTTGCAAGGAAAATCAAACCATATCCCGTATCGTGATTCCAAGCTCACTCGAATGCTTCAGGATTCACTTGGAGGAAACACTAGGACTGCATTACTATGTTGTTGCTCACCCAGTGCTTCTAATGTATCAGAGTCTCTGTCCACACTCCGTTTCGGTGCAAGAGCGAAACACATAAAGTCCTCACCTCGAGTCAATTGCATTGAAGAAAAAAGCAGCACGGGCTCCACTGCTTCTTCTCCACCCGGTGATGATTTTTCTTCAAGAATTATGGACAAGTTGGGGAAAATATTGAATATTGAAGATGTGAAGTTATTGGAGGAATTATTCATTCAAGAGGGCATTCTTTTCGATCTACAATCAGTTGAAGAGGAGCAAGAAATAGAAGATCTTAACTATCAGACTATATCCTTACTACAAGAAGCCTTGGAAAAGCTCACATCTACCGTTGATGAGCTTAAAAGGGAGAACAGCATTCTCAAGGAAAAAGTTGATGCCTCTATGGAGTCTTTCTTCTGCAAGGAAGATATGAAAAGATCGATTCATAATATGATTTTTGGTGGCGTTATCTTTGTTTCTCTTTGGGGTTTTTTGGTGTGGGTTATTTGA 756 0.4074 MRSGKLILVDLAGSEKVEKTGAEGRVLEEAKTINKSLSALGNVISSLTCGLQGKSNHIPYRDSKLTRMLQDSLGGNTRTALLCCCSPSASNVSESLSTLRFGARAKHIKSSPRVNCIEEKSSTGSTASSPPGDDFSSRIMDKLGKILNIEDVKLLEELFIQEGILFDLQSVEEEQEIEDLNYQTISLLQEALEKLTSTVDELKRENSILKEKVDASMESFFCKEDMKRSIHNMIFGGVIFVSLWGFLVWVI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151340g00004 251 ProSitePatterns Kinesin motor domain signature. 4 15 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc151340g00004 251 Coils Coil 185 219 - -
Stsc151340g00004 251 Gene3D Kinesin motor domain 1 118 IPR036961 -
Stsc151340g00004 251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 211 IPR027417 -
Stsc151340g00004 251 SMART kinesin_4 1 116 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc151340g00004 251 ProSiteProfiles Kinesin motor domain profile. 1 108 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc151340g00004 251 Pfam Kinesin motor domain 2 108 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc151340g00004 251 PRINTS Kinesin heavy chain signature 58 79 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc151340g00004 251 PRINTS Kinesin heavy chain signature 5 23 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc151340g00004 251 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 213 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151340g00004 Stsc-Chr151340 25023 26670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151340g00004 4 112 Calmodulin-binding Proteins AT5G65930 50.459 2.20e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151340g00004 - - var:108341546 328.176