Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151340g00001 ATGTGTTTGCCTGACGCAGAGAGAGACATGGCTCTCGAAGCTGTGTTGTATTCTAATACTCAACAACCAGATCCTTCTTCTCTCTTCCCTTCTTATGGAATCTTCAACAATAACAAGGACATTTTCAGCTACAACAACAACCAACATGATGATGAACACCAATCCATTATTACTGGACTCGATTACTTACTCTCACCGCCACTTCCACCGCCGCAGTGCTCGGAAGAAACAACAACCATTGACACCACCACTCCATCAGCAAGTTGTAATAATTGTTGTGCAGAGCGTCCCAAGAGAAGGAGAGCGAAGACGAGAAAGAACAAAGAAGAGATCGAGAATCAAAGAATGACTCACATTGCTGTCGAGCGTAACAGAAGGAAGCAAATGAATGATTACCTCTCTCTCCTTCGCTCTCTCATGCCAGATTCTTACGTCCAAAGGGGTGACCAAGCATCCATAATAGGGGGTGCTATTAACTATGTGAAGGTGCTTGAGCAGAAACTGCAGTTTCTTGCTGCTCATCACAAAGATATTAGAGATGAAGAGGTACATAATATTGCTGATGGTAATGGCGGCATGCCTTTTTCGGAGTTCTTCGCCTTCCCACAAGTGACAGGGAATGCTGATATTGAGGTAACAATGGTGGAAAGCCATGCAAATCTGAAAATAAGGTCCAAGAAGAAGCCCAAACAGCTCTTGAAGATGGTGTCTAATTTGCAAGCCATGCGCCTCACAATCTTGCACCTTAATGTCACCACCACCAACGATATTGTCCTCTATTCTCTCAGCGTCAAGGTGGAGGATGATTGCAAGTTGGGATCAGTGGATGAGATAGCCACAGCTGTGTGCCAAATGATGGAAAACATTCAACAAGAGTCAATGTTGATCAATTAA 894 0.4396 MCLPDAERDMALEAVLYSNTQQPDPSSLFPSYGIFNNNKDIFSYNNNQHDDEHQSIITGLDYLLSPPLPPPQCSEETTTIDTTTPSASCNNCCAERPKRRRAKTRKNKEEIENQRMTHIAVERNRRKQMNDYLSLLRSLMPDSYVQRGDQASIIGGAINYVKVLEQKLQFLAAHHKDIRDEEVHNIADGNGGMPFSEFFAFPQVTGNADIEVTMVESHANLKIRSKKKPKQLLKMVSNLQAMRLTILHLNVTTTNDIVLYSLSVKVEDDCKLGSVDEIATAVCQMMENIQQESMLIN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151340g00001 297 SMART finulus 119 170 IPR011598 GO:0046983
Stsc151340g00001 297 Pfam Helix-loop-helix DNA-binding domain 114 164 IPR011598 GO:0046983
Stsc151340g00001 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Stsc151340g00001 297 Gene3D - 100 182 IPR036638 GO:0046983
Stsc151340g00001 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 176 IPR036638 GO:0046983
Stsc151340g00001 297 Coils Coil 161 181 - -
Stsc151340g00001 297 PANTHER MAX DIMERIZATION, MAD 58 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151340g00001 Stsc-Chr151340 5839 7632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151340g00001 104 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 60.335 8.70e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151340g00001 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151340g00001 - - aip:107645875 410.223