Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151335g00004 ATGAGTTGGAAGAGGGTTTTGAAGTCTGCACAGGCACTTGCTGCACACACCTTTCTCTTGTGCTTCACTGCTTTGCTTGTTCTTAAGCTCGATCACCGTCTCTATTCTTCTTGGTGGTTAATATTTTGCCCTCTTTGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTTTCGCTACCAGCTCCAACAGCCCCACGTAACCGAAATTGGGCACCGTGCCATGCCGTCGTTGCAATGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGACACTTTCCAGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATCATTCTCATAGACAATTTCAGAATGTGCAGGGCTCTAATGCCAGGAGATGAAGAGAACATGAGCGATGAGGCGATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTCATTGCAGCTACAGTGTTCACACTCCTAAAACTGAGTGGTGACGTAGGTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGCCATTGCCGAGTGTTTTGCTTTTCTTGTATGTACAAAGTGGTCTAATCCGGTGATTCATAGAAATTCAAGAGAACCCAGTTCTTCTTCTACTACTGTTAGATATCTTGACTGGAATGGTGGTTTAGTTGTTTCTTCAGAGGAAAATCAACGTCCAGAGAGAATGTGTAGCCTGCAAGATGTTGGAGGCCATTTCATGAAAGTACCAATTATTATATTCCAGGTTCTTCTTTGTATGTACTTGGAGTTAGTGGAGAAACTTGTTTTGCTGCTAAATAGTGGAGCTGGTGGAGGAATTTATATTAGAATTTCTTCAACAGCTCATGATTGCTTGGGGTTCTTTCACCATGGTTCTAGGTTATTAGGTTGGTGGTCAATTGATGAAGGTAGTCGAGAAGAACAGGCACGCTTATACCATGAAGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCACCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTCGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTCGGTGAACAGACAGAAATTACAAAATACAGCCAGCAAGAGTATGAAAGACTTCAAAATGAAAAAGTGTTGTGCAGAGTTTGTTTCGAGGGAGAGATAAGTGTCGTACTTCTCCCATGCCGGCATCACATCCTTTGCAGCAATTGCTCCGAGAAATGCAAGAATTGCCCGATATGCCGCGTTGCCATTGCAGAGCGGCTACCTGTGTATGATGTTTAG 1302 0.4309 MSWKRVLKSAQALAAHTFLLCFTALLVLKLDHRLYSSWWLIFCPLWMFHAVVARGRFSLPAPTAPRNRNWAPCHAVVAMPLLIAFELLLCIYLESLYVRHFPAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREPSSSSTTVRYLDWNGGLVVSSEENQRPERMCSLQDVGGHFMKVPIIIFQVLLCMYLELVEKLVLLLNSGAGGGIYIRISSTAHDCLGFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHHILCSNCSEKCKNCPICRVAIAERLPVYDV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151335g00004 433 Pfam Zinc finger, C3HC4 type (RING finger) 383 425 - -
Stsc151335g00004 433 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 269 - -
Stsc151335g00004 433 Pfam Transmembrane Fragile-X-F protein 28 271 IPR019396 -
Stsc151335g00004 433 ProSiteProfiles Zinc finger RING-type profile. 386 421 IPR001841 -
Stsc151335g00004 433 FunFam Kinesin-like protein KIN-7D, mitochondrial 363 431 - -
Stsc151335g00004 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 431 IPR013083 -
Stsc151335g00004 433 SMART ring_2 386 420 IPR001841 -
Stsc151335g00004 433 SUPERFAMILY RING/U-box 377 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151335g00004 Stsc-Chr151335 11893 17580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151335g00004 5 433 C3H Transcription Factor Family AT1G73950 67.462 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151335g00004 - - gmx:100791390 781.941