Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151335g00002 ATGTCATCATCAAGTGGAACCAGTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAGATGACTCAAAAGAGCAATGGGAGAAGATTGCTTCAGAGGTTCCAAGCAAAACCATAGAAGAATTGAAGCAACATTACCAGTTACTAGTAGAAGATGTAACTGCAATAGAAGCTGGTCAAATACCATTCCCAAATTATACTTCAGAAGAAACTACATCTTCAAGTAAAGATCTCCATGGATCTTCTTCCAAGTCTTCAAATTCTGATAAGAGATCAAATTGTAACTATGGAAGTGGGTTCTCTGGCTTAGGACATGATTCCTCAACCACTCATAGTGGTAAAGGATCCTTGTCAAGGTCATCAGAACAAGAAAGGAGGAAAGGAATTCCATGGACAGAAGAGGAACACAGGCTATTCTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCAAGAACTCCAACTCAAGTAGCAAGTCATGCTCAGAAGTACTTCATAAGATTGAACTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGACATTACAAGTGTCAACAATGGAGATGTGGCCAATAACCAAGCACCAATTACAGGACAGCATGGAAGCACAACAATCCCTTCAAGCACAATGGCTATGGGACAATCAATGAAGCATAGAGCACAACCACACCATCATCATCATCATCCTCATATACCTGCTGGTTTAGGCATGTATGGTGCACCAGTTGGGCACCCTGTGGCTGCTCCTCCTCATGGCCATATGGCATCTGCAGTTGGAACTCCTGTCATGCTTCCGCCCGGACCGCACCCTCATCCGCATCCTCATCATCCGCCTTATGTTGTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCATCAATGA 942 0.4268 MSSSSGTSWSYEEEKAFENAIAMHWIEDDSKEQWEKIASEVPSKTIEELKQHYQLLVEDVTAIEAGQIPFPNYTSEETTSSSKDLHGSSSKSSNSDKRSNCNYGSGFSGLGHDSSTTHSGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHGSTTIPSSTMAMGQSMKHRAQPHHHHHHPHIPAGLGMYGAPVGHPVAAPPHGHMASAVGTPVMLPPGPHPHPHPHHPPYVVPLAYPMAPPTMHQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151335g00002 313 SUPERFAMILY Homeodomain-like 8 63 IPR009057 -
Stsc151335g00002 313 CDD SANT 137 182 IPR001005 -
Stsc151335g00002 313 PANTHER TRANSCRIPTION FACTOR KUA1 5 302 - -
Stsc151335g00002 313 ProSiteProfiles SANT domain profile. 4 53 IPR017884 -
Stsc151335g00002 313 SUPERFAMILY Homeodomain-like 132 187 IPR009057 -
Stsc151335g00002 313 Gene3D - 136 188 - -
Stsc151335g00002 313 CDD SANT 12 57 IPR001005 -
Stsc151335g00002 313 SMART sant 134 184 IPR001005 -
Stsc151335g00002 313 SMART sant 5 59 IPR001005 -
Stsc151335g00002 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Stsc151335g00002 313 MobiDBLite consensus disorder prediction 71 124 - -
Stsc151335g00002 313 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Stsc151335g00002 313 FunFam Transcription factor SRM1 1 70 - -
Stsc151335g00002 313 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Stsc151335g00002 313 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Stsc151335g00002 313 FunFam transcription factor MYB1R1 136 187 - -
Stsc151335g00002 313 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Stsc151335g00002 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 184 IPR006447 GO:0003677
Stsc151335g00002 313 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Stsc151335g00002 313 MobiDBLite consensus disorder prediction 71 136 - -
Stsc151335g00002 313 Gene3D - 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151335g00002 Stsc-Chr151335 2100 3231 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151335g00002 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151335g00002 - - gmx:778049 465.692