Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151333g00012 ATGGGTCTTGGTGGCAATTTCTGGGAGCTACTAAAGCCCTATGGACGGAGCGGAGGGTTTGATTTCTTGAGAAACAAGCGAGTGGCTGTGGACCTCTCTTACTGGATTGTGGCTCACGAGACTGCCATAAAGGCTCATCATGTTCGCAAACCCCACCTCAGACTCACCTTCTACCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTGTTTATTGTTGATGGAACTCCTTCGCCGTTGAAATCAGAGGCCCGGGTTGCGAGGTTTTTCCGGTCTTCTGGCATTGAATTAACTAGCTTGCCAGTGCCTGAAGGAGGTGTCTCAGCTGAGAGGAACAGTGCTTTTACAAAATGTGTTCAAGAATGTGTGGAACTTCTTGACCTACTTGGAATGCCTGTGTTAAAGGCTAAAGGAGAGGCTGAAGCACTTTGTGCCCAATTAAATTTGGAAGGTCATGTAGATGCTTGCATCACAGTTGACAGTGATGCATTTCTCTTTGGGGCCAGATGTATAGTAAAGGGTTTTCGCCCCAATTCCAAAGAACCATTTGAGAGCTACAATATGTCAGATATTGAAGCTGGTCTTGGGTTGAAGAGGAAACACTTAATAGCTCTTGCTCTTCTGGTTGGAAATGACCATGATATGAATGGTGTTCGAGGGATCGGACTTGAGACTGCTCTTCAGTTTGTTCGAGCTTTTAGTGAAGATGATATATTAAATAGATTACATGAGATAGGCAAAGGAAACACCACTCAAGTTCTCATAAGCATTAAATCTGGGGACAATATTGATACGGATGAGACCTCCCTGAATAAAAAACAACCCCACTGCTCATTCTGTGGGCATCCTGGCAGCATAAGGGAACACACGAAGTTTTCCTGTAAATATTGTCTCACTAATGACGAAGAAGGTTGTCTAAGAAAACCGGAGGGTTTCAAATGTGAATGCGTCTCCTGTGATATGAACAGGAAACATAAGGAGCAGAAAAGGCTAGAAAATTGGCACACAAAAGTTTGCGACAAGATTGCAAATGAACCAAATTTTCCAAAGGATGAAATCATTGACATGTATCTATGTAAAGACAACGGTTACTTCTCCGAAAAGGATGGCCCTTGCATGTCTTGGGAAAAACCTAATATTGAGATGTTGATTGATTTCTTAAACTTTCATCAGAACTGGGACCCATCCTACGTTCGGCGGCTGATCTTTCCTGTTATGTCCACCATCTTCTTGAGAGATATCACTACTACTACAGGAGAAGATTTGTTATTTGGACAGTATGAGTTTGATTCGTTGGAACGTGTGAAGACAAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGAGCATTTAACAACAACGTTGCCTATAGAATTCCATCAAATGTACCTGACACGCCCCAACCAGGTACAAGAGAACTGGATGAAACGGTGGATTCTCTAGACGACTGTGATGTTCCTGAGGTTCTCATGGATGAGGGTTCGAGTTTTCTATTGACAGATGAAAATATGGACCTTGTAGCAGCTGCTTTTCCAAAAGAAGTGAAAAAGTTTTGGCACGAACAGGAACTGAAGGAGTTGAAAAGAAGAAAGAGTCCATCCTCTAGATCACATAAAAATGAAAAATCAGCATCACCAAGCTCAAAGAGGTTGCAGCTAAACATCACAGAATACTTCCCTTCAACTAAAGTTAAAAATCAATCAAAAGCAGAAGATTCATCAAAGGATATTGGTGATAGCCAAGGTAGTGGAGACCCAAAAGGGAAGAGGAAAGAGTCAAGTTCTAACCTCCCGAAATCCGTGCGGCGCCGCCTTCTATTTGACTAG 1836 0.4254 MGLGGNFWELLKPYGRSGGFDFLRNKRVAVDLSYWIVAHETAIKAHHVRKPHLRLTFYRTINLFSKFGAFPVFIVDGTPSPLKSEARVARFFRSSGIELTSLPVPEGGVSAERNSAFTKCVQECVELLDLLGMPVLKAKGEAEALCAQLNLEGHVDACITVDSDAFLFGARCIVKGFRPNSKEPFESYNMSDIEAGLGLKRKHLIALALLVGNDHDMNGVRGIGLETALQFVRAFSEDDILNRLHEIGKGNTTQVLISIKSGDNIDTDETSLNKKQPHCSFCGHPGSIREHTKFSCKYCLTNDEEGCLRKPEGFKCECVSCDMNRKHKEQKRLENWHTKVCDKIANEPNFPKDEIIDMYLCKDNGYFSEKDGPCMSWEKPNIEMLIDFLNFHQNWDPSYVRRLIFPVMSTIFLRDITTTTGEDLLFGQYEFDSLERVKTRYGYQFYVVKWKRAFNNNVAYRIPSNVPDTPQPGTRELDETVDSLDDCDVPEVLMDEGSSFLLTDENMDLVAAAFPKEVKKFWHEQELKELKRRKSPSSRSHKNEKSASPSSKRLQLNITEYFPSTKVKNQSKAEDSSKDIGDSQGSGDPKGKRKESSSNLPKSVRRRLLFD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151333g00012 611 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 16 552 IPR006084 -
Stsc151333g00012 611 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 414 IPR036279 -
Stsc151333g00012 611 Gene3D - 5 198 - -
Stsc151333g00012 611 FunFam Flap endonuclease GEN-like 1 199 256 - -
Stsc151333g00012 611 SMART xpgineu 129 199 IPR006086 GO:0004518
Stsc151333g00012 611 Pfam XPG N-terminal domain 2 93 IPR006085 GO:0004518
Stsc151333g00012 611 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Stsc151333g00012 611 SMART xpgn3 1 97 IPR006085 GO:0004518
Stsc151333g00012 611 Gene3D - 199 261 - -
Stsc151333g00012 611 MobiDBLite consensus disorder prediction 529 611 - -
Stsc151333g00012 611 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Stsc151333g00012 611 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Stsc151333g00012 611 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Stsc151333g00012 611 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Stsc151333g00012 611 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Stsc151333g00012 611 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Stsc151333g00012 611 MobiDBLite consensus disorder prediction 571 601 - -
Stsc151333g00012 611 CDD PIN_GEN1 5 203 - -
Stsc151333g00012 611 MobiDBLite consensus disorder prediction 549 570 - -
Stsc151333g00012 611 FunFam Flap endonuclease GEN-like 1 2 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151333g00012 Stsc-Chr151333 47101 50819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151333g00012 20 246 Core DNA Replication Machinery Family AT5G26680 29.960 3.18e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151333g00012 K15338 - gmx:100791251 898.271