Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151333g00007 ATGGCGACTCCAGAAGAGGCAAAGCTCGAAACTTTCCTCCAGTGGCTACAGCCAAATGGGGTGGAGCTAAGAGGCTGCAAGATCAAGCACTGTGATTCCAGAAAAGGATTTGGCATTTTTTCTGATAAAGATGTCTCTGATGGGGTTTTGTTGGCTGTTCCGCTTGACCTAGCAATTACTCCCATGAGGGTTTTGCAAGATCCTCTTCTAGGGCCAGCATGTAGATCTATGTTTGAAGAAGGACATGTGGATGACAGGTTACTAATGATGCTCTTGCTGACTGTGGAGCGATTGCGCGAGAATTCTCTGTGGAAGCCGTACCTTGATATGCTCCCAACCACTTTTCACAATCCACTTTGGTTTAGTGATGATGAACTTCAAGCACTAAGAGGAACAACATTATACCGTGCAACTGAGTTGCAGAAGAAAAGCCTGGTATCTTTATATGAAACCAAAGTGAAGGATTTGGTGAAGAAGCTTTTGACTCTTGATGGAGCTTCAGAGATTGAGGTGCGCTATGAAGATTTCCTTTGGGCCAATTCAGTATTCTGGAGCCGTGCTTTGAACATTCCGATGCCTCGTTCTTATGTATTTCCAGAAATGCAAGAAGGAGAAGCTCAAGAAATTAAACATGATATTAAGATAACGAAGTCTTATAATTTTCTTTCAGGGGATCAGGTTAAACAATCCGAAAATCGAAAGAAGGAAATGATGTGTACTACAACGCAAGGAGACACTGTTTGGGTAGAGGGTCTTGTCCCTGGCATTGACTTTTGCAACCATGATCTGAAGCCGATAGCAACATGGGAAGTTGATGGAACTGGTTCAACAACAGGGGTTCCTTGCTGCATGTACCTTCAATCTGCTGCTCCAAGTCCCTTGCAGATTGATCAAGAAATTTCCATTAGTTATGGCAACAAAGGAAATGAGGAACTTCTATATCTGTATGGTTTTGTCATTGATGATAACACAGATGACTATCTCATGGTCCACTATCCAGCAGAAGCACTCAATACTATTTCTTTTTCAGAATCCAAAAGCCAGTTGCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAGCTTTGCTGGAACAAGGGTTTTTTCCATTAGGCAATCGAAGTAAAGGAGAAAACAACGATGGCAAGGTTGATCAAGTTCCCAATTATAGTTGGAGTGGTCAGCGCAAGACGCCATCTTATGTAAACAAGCTTGTTTTTCCTGAGAAATTTATGACTACTTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTACAAGGTTTCTTCAATGCTTGAAGAGCTTGTAGGACCTGAAGGGGGGAGAGAACTCTCTGATACAGATGTGCAAGCAGCAATATGGGAGGTTTGTGGTGATTCAGGAGCTTTTGAAATTCTTGTTGATCTTCTTCGTGTGAAGTGA 1428 0.4237 MATPEEAKLETFLQWLQPNGVELRGCKIKHCDSRKGFGIFSDKDVSDGVLLAVPLDLAITPMRVLQDPLLGPACRSMFEEGHVDDRLLMMLLLTVERLRENSLWKPYLDMLPTTFHNPLWFSDDELQALRGTTLYRATELQKKSLVSLYETKVKDLVKKLLTLDGASEIEVRYEDFLWANSVFWSRALNIPMPRSYVFPEMQEGEAQEIKHDIKITKSYNFLSGDQVKQSENRKKEMMCTTTQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGSTTGVPCCMYLQSAAPSPLQIDQEISISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEALNTISFSESKSQLLEVQKAEMRCLLPKALLEQGFFPLGNRSKGENNDGKVDQVPNYSWSGQRKTPSYVNKLVFPEKFMTTLRTIAMQEDELYKVSSMLEELVGPEGGRELSDTDVQAAIWEVCGDSGAFEILVDLLRVK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151333g00007 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 437 - -
Stsc151333g00007 475 Pfam SET domain 36 305 IPR001214 GO:0005515
Stsc151333g00007 475 CDD SET_LSMT 32 319 - -
Stsc151333g00007 475 Gene3D set domain protein methyltransferase, domain 1 5 319 - -
Stsc151333g00007 475 SUPERFAMILY SET domain 8 323 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151333g00007 Stsc-Chr151333 26088 31350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151333g00007 1 190 NAC Transcription Factor Family AT3G56570 28.426 3.32e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc151333g00007 SET 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151333g00007 - - gmx:100793324 758.829