Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151328g00003 ATGGAAACTCTAAAAGGTGCGATTCCCGAAGGCCTGAAACACATGATCGGTGATAGCACCGTCGATGACCTTCGCGCAACCACTTCCTCTCTCCACAGCTTCTTCCACCACTTCGAGCCCTTCCTCCAGTTACTCACTGAACTCGCGGATCCCAAGCATGCTCTCTGCGGCAAGAGCAAAGACGCTGCTCTCGAATCCAAGCAGCTCGGAAACCAGTTCTTCTCCAAAGGAGATTACGCCAACGCTCTTGATTGCTATACGCAGGCATTGCGCAAGGCACCTTTTGAGGCTAGTGATATGGAAAATAATTTGGTTGCAACCTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTGACAGAGTGTTTGCGAGATTGCACTCGTGCCCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGAAGAGGTAAGGCTAATGTTTCCCTTGGAAATCATAAAGATGCGGTGTGTGACCTAAATATGGCTAAAATTATGGAATCATCATCGAGTGGAAAGAGACAAATAGAAAGTGAGCAGAAAAATATTTTAGACCAATGCAATAGCACAAGCACAGTATTGCAGCATAAGGAGAACACCTTGACTACAGTGGGTGAGGTTCCCCAAGGAAAGCTACAGTGTGTCACCATACCTGAGAAAGGAAGAGCCATGGTATCGTCACATGACATTTCACCGGGTTCTTTGGTTCATAGTGAAGAACCCTATGCTGTGATAATACTAAAGCAATGCCGGGACAGTCATTGCCACTATTGTTTGAATGACCTACCTGCTGATCAAGTACCATGTAGATCATGTTCAGTACCACTGTATTGCTCCCAGCAGTGCCAGTCAAAGGCTGGTGGGCAAGTTTTAAGGATTTTCCCAGAAGTTCATAGTGCTATTGAAAAGCTACCCAGTGACCTTGGAGAGTATGCGGTCAAAGTTATTCAAGGCCATGATTCCAAACATGAAACTGAGAATATCACTGAACATAAGCATGAATGTCAAGGTGTAAATTGGTCTGCAGTATTGCCATCAGAGGTGGTTTTAGCTGGCCGAATACTGGCAAGGTTTTTATCAGAGAGGAGGACATCAGAACATATTACATATTTTGTGGAGAAGCTGGAGCTTTCCCATTGTTATGAACATATGCTCCCTGAAAGCAAATTGGATACACATATATATTCCATTGTGTTATTATATTGTCTTAAACGCTCTTTTGGAGCTGCATTTTCCATTGATGAAGTCTCCATTTCTCAGGTTGTTATAATTATTTCTCAAATTAAAGTGAATTGTATGACTATTGTTCATTTAAAATCAAAAGATGCTCACGGACTTTCTGATCAGTTTGGAGAATTTCCATCCGGTGCATATTTAACTAGTAATGTGGAGCAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGAAGTTTATTCAACCATTCTTGCCAACCAAATATTCATGCATATTTCCTTTCACGTAATTTGTGTATACGGACAACAAAGGTTATACCTGCTGAGGGTCATCTGGAGTTGTCTTATGGTCCACAGGTTGGGTTCTGGGATTGTAATGATCGCCTTAATTTCCTCAAAGAGGAGTACATGTTTCAGTGCCAGTGTACTGGTTGTTCCAAAGTGAATCTATCTGATATTGTCCTCAATGCATTTTGCTGTGTCAATCCTAATTGTTCTGGTGCAGTGTTGGATAGCAGAGTAATTAACTGTGAAAAGCAGAAAATCAAGAACTTTATGAACCATTTAAAGATAGACAAGAATGATGACATTCATACAGTGCTCAACCAAAACAATGCCTCCTGTCATATTCAACCTGGACACTGTCTGAAGTGTGGTTCTTACCGTGATTTGGTATCTTCAAGTGCTGCAGTTGATAAAGCTTTAATATTCATCAAAAGGTTACAGGATGCAATACTATCAAAAGAAATTTCAAATACCACCATTGCAGATGCTTTAAAATCCTTACATTTGTTAAGATCAAATTTGCATGCCTACCACAAGCTTATTGCAGAGGTAGAGGATAACCTTGCACAAGCCTTTTGTTTGTTGGGAGAATTACAATTATCTATGGACCATTGCAAAGCATCCATCGAGATTCTAGAGAAGTTATATCATCCTGATGATATTGTTATTGCCTATGAACTTGTGAAGCTTTGTTCGATCCAACTTACCATAAGTGATGGTGCTGCTATGGATACCATTAGTCGGATAGGTGATATTTTCTCATGTTATTATGGACTTCATGCGGACTTGGTTTTCCCATATCTTCAATACCTTAGGAGATAA 2310 0.4065 METLKGAIPEGLKHMIGDSTVDDLRATTSSLHSFFHHFEPFLQLLTELADPKHALCGKSKDAALESKQLGNQFFSKGDYANALDCYTQALRKAPFEASDMENNLVATLYINRATVLHKMSLLTECLRDCTRALQICPSYAKAWYRRGKANVSLGNHKDAVCDLNMAKIMESSSSGKRQIESEQKNILDQCNSTSTVLQHKENTLTTVGEVPQGKLQCVTIPEKGRAMVSSHDISPGSLVHSEEPYAVIILKQCRDSHCHYCLNDLPADQVPCRSCSVPLYCSQQCQSKAGGQVLRIFPEVHSAIEKLPSDLGEYAVKVIQGHDSKHETENITEHKHECQGVNWSAVLPSEVVLAGRILARFLSERRTSEHITYFVEKLELSHCYEHMLPESKLDTHIYSIVLLYCLKRSFGAAFSIDEVSISQVVIIISQIKVNCMTIVHLKSKDAHGLSDQFGEFPSGAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNIHAYFLSRNLCIRTTKVIPAEGHLELSYGPQVGFWDCNDRLNFLKEEYMFQCQCTGCSKVNLSDIVLNAFCCVNPNCSGAVLDSRVINCEKQKIKNFMNHLKIDKNDDIHTVLNQNNASCHIQPGHCLKCGSYRDLVSSSAAVDKALIFIKRLQDAILSKEISNTTIADALKSLHLLRSNLHAYHKLIAEVEDNLAQAFCLLGELQLSMDHCKASIEILEKLYHPDDIVIAYELVKLCSIQLTISDGAAMDTISRIGDIFSCYYGLHADLVFPYLQYLRR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151328g00003 769 Gene3D SET domain 414 517 IPR046341 -
Stsc151328g00003 769 SUPERFAMILY SET domain 212 548 IPR046341 -
Stsc151328g00003 769 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 768 - -
Stsc151328g00003 769 ProSiteProfiles SET domain profile. 213 518 IPR001214 GO:0005515
Stsc151328g00003 769 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Stsc151328g00003 769 Gene3D Tetratricopeptide repeat domain 39 202 IPR011990 GO:0005515
Stsc151328g00003 769 Gene3D Tetratricopeptide repeat domain 526 768 IPR011990 GO:0005515
Stsc151328g00003 769 Pfam SET domain 224 518 IPR001214 GO:0005515
Stsc151328g00003 769 SMART tpr_5 106 139 IPR019734 GO:0005515
Stsc151328g00003 769 SMART tpr_5 678 711 IPR019734 GO:0005515
Stsc151328g00003 769 SMART tpr_5 140 173 IPR019734 GO:0005515
Stsc151328g00003 769 SMART tpr_5 63 96 IPR019734 GO:0005515
Stsc151328g00003 769 SUPERFAMILY TPR-like 60 698 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151328g00003 Stsc-Chr151328 35462 41567 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc151328g00003 SET 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151328g00003 K24634 - gmx:100783548 1104.74