LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151318g00001	ATGAGACCGTCGCCGCCACGTTCCTGCGTCGCGCCACCTCGTGCTCGCCACACTCACACACACCATCGTCTCTCTGCTTCCGTCTCTCACTGCCCTTTCCTGCGTCGTGCCGCTGGTGCCACCACCTTCAAGCCCTCAAGGATCTTCGAAGAAATTGGGATCAATGTACAGTTTCCAGAACCAATTCTAATAGTCACAACAAACTGGAATGTTGCTGTAAATGTCGAGAATGACATAGATGAACCATTGCTTTTGACATGTTTCTTCAAAGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGAACTTAGTAAGAGGCTTGTCTTGGAGAATAAGCAAGTCAAATTCTGGTTTCAGAATTGGAGAACTCAAATGAAATTATGA	384	0.4661	MRPSPPRSCVAPPRARHTHTHHRLSASVSHCPFLRRAAGATTFKPSRIFEEIGINVQFPEPILIVTTNWNVAVNVENDIDEPLLLTCFFKECPHPDEKQRLELSKRLVLENKQVKFWFQNWRTQMKL	127

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151318g00001	127	MobiDBLite	consensus disorder prediction	1	21	-	-
	Stsc151318g00001	127	Pfam	Multicopper oxidase	51	86	IPR011707	GO:0005507
	Stsc151318g00001	127	Gene3D	-	80	127	-	-
	Stsc151318g00001	127	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	86	126	IPR042160	-
	Stsc151318g00001	127	CDD	homeodomain	85	126	IPR001356	GO:0003677
	Stsc151318g00001	127	ProSitePatterns	'Homeobox' domain signature.	103	126	IPR017970	GO:0000981\|GO:0006355
	Stsc151318g00001	127	ProSiteProfiles	'Homeobox' domain profile.	85	127	IPR001356	GO:0003677
	Stsc151318g00001	127	Pfam	Homeodomain	85	126	IPR001356	GO:0003677
	Stsc151318g00001	127	SUPERFAMILY	Homeodomain-like	84	126	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151318g00001	Stsc-Chr151318	22481	24806	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151318g00001	85	126	Homeobox Transcription Factor Family	AT5G52170	78.571	2.86e-19	80.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Stsc151318g00001		Homeodomain	1.6e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151318g00001	K09338		-	zju:107414400	82.0333