Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151316g00008 ATGGCATCAAGATCATATGCTAATCTCTTTGACTTAGCTTCTGGAGGAGATTTGCTGGATATTCCTCGCACCCCAAGAGCTCTTCCAAGGATTATGACTGTTCCTGGAATTATCTCTGACCTTGATGGTTGCGGTGCTAATGATGGGGATTCTGATGTCAGCTCCTCTAGTTGCCGGGAGCGGAAGATCATTGTTGCAAACATGCTGCCATTGCATGCTAAAAGAGATACAGAGAATTCTAAGTGGTGCTTCAGTTGGGATGAGGATTCAATTTTACTACAATTGAAAGATGGATTTTCTTCCGATACAGAGGTAATTTATGTGGGTTCTCTTAAGGTTGATATAGATGCCAGCGAGCAGGAAGAAGTTGCCCAGAGATTACTGGATGACTTCAATTGTGTACCTACCTTTCTATCCCATGATCTCCAGAAAAAGTTCTATCTTGGGTTTTGCAAGCAGCAGCTCTGGCCTCTCTTTCATTATATGCTACCAATGTGCCCAGATCATGGTGATCGCTTTGACCGCATACTATGGCAGGCTTATGTTTCTGCAAATAAAATATTTGCCGACAAGGTTNNNNNNNNNNATTTTGTCTGGGTTCATGATTATCACCTGATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGAGTTAAACTTGGATTCTTCTTGCACAGTCCTTTTCCTTCATCTGAAATTTATCGAACTTTACCTGTAAGGGATGAAATTTTGAGGGGACTTTTGAATGCTGATTTAATTGGTTTTCATACGTTTGATTATGCACGGCACTTCCTCTCTTGCTGCAGCAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTTTGCCGGTTGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGATTCAGGACGAGTTTGAGGGTAAGAAGGTCATTGTTGGTGTTGATGATATGGATATTTTTAAAGGCATCAGTCTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGGAGAATCCAGATATGCAGGGCAAAGTTGTCCTTGTTCAAATTGTAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACTTATTTAATTGCCCAGAGGATTAATGATACCTATGGTTCAGAGGAATATCAGCCTGTCAAACTCATTGACCGCCCTGTTCCTCGTTTTGAGAAGAGTGCTTATTATGCTGTAGCTGAATGTTGCATTGTAAATGCAGTAAGAGATGGCATGAACCTAGTCCCATACAAATATCTTGTCTGCAGGNNNNNNNNNNGGAAAATTGATTCTCCTCGAACAAGCATGCTCGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCTATCAGGGTCAATCCCTGGGACATTGATGCTGTTGCTGACGCACTGTGCTTGGCCCTTACTATGAATGACTCTGAGAAGCAATTGCGCCACGAGAAACACTATCGTTATGTCAGTTCTCACGATGTAGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGCTTGGGTCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGATTTAGGAAGTTGTCTATTGATCATATTGTTTCAGCTTACAAGCGAACTAGTAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCGCAGTCTTCTATAAATAAAGCCCCCAGCCCCGAAGTCATATCTATGCTAAACGCTCTGTGTAGTGATCCCAAGAACATTGTTTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTCAGCTCATGTCAATTGTTGGGACTTGCTGCTGAGCATGGTTACTTTCTAAGGTGGAGTAGAGATTCTGAATGGGAATCCAGTCACTTGTCTGCAGACCTTGACTGGAAAAACATAGCGGAACCCGTCATGCAGTTGTATACAGAGGCAACTGATGGTTCCAGCATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCGGATTTTGGTTCCTGCCAAGCCAAGGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGTAAGGGTTTGGTAGCCGAAAAGGTTATTTCGACCATGGTTAATGGCGGTAATCCACCGGATTTTGTTATGTGCATTGGTGATGATAGGTCCGACGAAGACATGTTTGAGAGTATTTTAAGGTCAGTATCCTGCCCGTCATTACCCGCACCTCCAGAGATTTTCGCCTGCACTGTAGGTAGGAAGCCTAGCAAGGCAAAGTATTTTCTTGATGACACTTCGGATGTCGTGAAGTTACTTCAGGGCCTTGCTGCCTCATCCAATCCAAAACCCCGGCATCTTGCGCAATTCCAAGTTTCTTTTGAGAGCACAATTTGA 2550 0.4275 MASRSYANLFDLASGGDLLDIPRTPRALPRIMTVPGIISDLDGCGANDGDSDVSSSSCRERKIIVANMLPLHAKRDTENSKWCFSWDEDSILLQLKDGFSSDTEVIYVGSLKVDIDASEQEEVAQRLLDDFNCVPTFLSHDLQKKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRILWQAYVSANKIFADKVXXXXFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTSAKLKEIQDEFEGKKVIVGVDDMDIFKGISLKLLAVEHLLQENPDMQGKVVLVQIVNPARGSGKDVQEAKKETYLIAQRINDTYGSEEYQPVKLIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYLVCRXXXXKIDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALCLALTMNDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHIVSAYKRTSRRAIFLDYDGTVVPQSSINKAPSPEVISMLNALCSDPKNIVFIVSGRGRDSLSDWFSSCQLLGLAAEHGYFLRWSRDSEWESSHLSADLDWKNIAEPVMQLYTEATDGSSIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVKRGQHIVEVKPQGISKGLVAEKVISTMVNGGNPPDFVMCIGDDRSDEDMFESILRSVSCPSLPAPPEIFACTVGRKPSKAKYFLDDTSDVVKLLQGLAASSNPKPRHLAQFQVSFESTI 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151316g00008 849 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 709 840 - -
Stsc151316g00008 849 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 828 IPR001830 GO:0003824|GO:0005992
Stsc151316g00008 849 Gene3D Glycogen Phosphorylase B; 54 308 - -
Stsc151316g00008 849 NCBIfam trehalose-phosphatase 578 827 IPR003337 GO:0003824|GO:0005992
Stsc151316g00008 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 308 - -
Stsc151316g00008 849 FunFam Alpha,alpha-trehalose-phosphate synthase 310 517 - -
Stsc151316g00008 849 Gene3D - 579 694 IPR023214 -
Stsc151316g00008 849 Gene3D - 709 839 IPR023214 -
Stsc151316g00008 849 SUPERFAMILY HAD-like 580 828 IPR036412 -
Stsc151316g00008 849 CDD GT20_TPS 61 533 IPR001830 GO:0003824|GO:0005992
Stsc151316g00008 849 CDD HAD_TPP 581 822 - -
Stsc151316g00008 849 Pfam Glycosyltransferase family 20 61 533 IPR001830 GO:0003824|GO:0005992
Stsc151316g00008 849 Gene3D Glycogen Phosphorylase B; 309 517 - -
Stsc151316g00008 849 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 537 - -
Stsc151316g00008 849 Pfam Trehalose-phosphatase 583 818 IPR003337 GO:0003824|GO:0005992
Stsc151316g00008 849 NCBIfam HAD-IIB family hydrolase 581 782 IPR006379 -
Stsc151316g00008 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 579 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151316g00008 Stsc-Chr151316 24340 29106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151316g00008 1 849 Trehalose Biosynthesis Gene Families AT1G23870 74.770 0.0 1349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151316g00008 K16055 - gmx:100775779 1548.1