Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151313g00003 ATGGGTAGCTTCAGTGAAGATGAAGAATGTCCATTCTTTGATGCAATATCCGATGATACTACTGACACCACTGAAGCTAATTCAAGTCCTAAGGATGTGTTCTTGAATGAGTTTGGCTATCAAGTTTGGATTCGGAGTCCGCCTAGTGTTCATGAGCGTAGGAATAATTTTATGAAGTGGATGGGACTCAGCAAGGAACAAGTTGCTGTTGAGAATTCCGTAGATGTTGATGTTAGGGAAGGGGAGGTAGATAGGATGAAAGATAGTAGTGGGAGTGTGACAAGAAGTTCTTCTTTCAAGGAGGAGTTTTGTTCAAATCAGCCATCGGTATCTTCTCAGTCTAGGATGGATTCTTCAGATGAGTTCAATTTGGTGGAGAACATGCAGTGCCGAGATGGGAAATCGGAGAGTGGAGCGAGGTGGAATCTGGATCCGCTGGGGCTCTACAGGGAAAGGAATGATGGTGGAAGAGGCGCAGGCTCGGATCATCGGGTTGTAGCTGAGGAGTGCAAAGATTCTGAGTACTTCCTTTGTGTGTCTGCAAATTTCCAGCATGAGAAGATATGTAAGGAGTCTGAAGACAGAGATGACTTTAAGCAGAGGTCAAAGAGGAACAATAGGGGTTGGTTCAAAAGATTTGGTTCAATAAGTTGCATGATTGATAGGCTAGGGGAATCTGATAGCAGCAGACTCGACGGCAGTTGTGTGTTCTTAGGGTCAAATAGGATCCGGAAAGTTAAGGTCCAAAGATTCCGGAAGCATACGAAGGAACTTTCGGCTCTTTACATGGGGCAAGATATTCAGGCACATAGAGGTTCAATCTTGACCATGAAATTCAGCCCTGACGGCCGGTTTCTTGCCAGTGCCGGCGAAGATGGCATTGTGAGATTGTGGAAAGTGGTTGAGGACGAGGGATGTAACGAAGTTGACATTCCGGAAGTTGATCCATCCTGCATTTACTTTACAGTGAATAATCTATCTGAATTGACACCCTTGTCTTTGGAAAAGGAAAAATTGTGCAAAGTGAAAGGCCTAAATAAAACATCCGATTCAGCTTGCATTGTTTTCCCTCCGAAGATCTTTCGGCTGTTGGATAAACCATTGCATGAGTTCCATGGTCATGAAGGTGAAATTCTGGATCTCTCTTGGTCAAACAATAATTGTCTGCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTTGGACATGACTTCTGCTTGAAAGTTTTTCCACATAGTAACTATGTGACATGCATACAATTCAATCCCGTGAATGATAATTATTTCATTAGTGGATCGATCGATGGAAAAGTGCGCATCTGGGAAGTTCCAGATTGTCATGTTGTTGATTGGACTGACATCCGCGAAATTGTGACTGCAGTTTGTTATCGGCCAAATGGTCAGGGAGGGATTATCGGGTCGATGACAGGCAATTGTCGGTTTTACACTCTATCAGAGAATCACTTGCAATTAGATTCCCAACTATGCTTGCTTGGTAAAAAGAAACTTCATTGCAGAGGAATAACTGGTTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTTACTTGTGCTGATTCAAAAGTCAGAATCCTTGATGGGCTTAATGTGGTTAGCAAATACGAAGGCCTTAGCGCAGCAGGACAAATGTCTGCATCTGTTACTCCGGATGGAAAGCATATTTTATCAACATGCAAGGACTCGAATGTGTATCTGTGGAATGTTATCGACAGCAAATCTAGCTCAACGAAAGCCAAGAAGATTAAGTCCTGTGAGAGATTCTTTTCAAATGCATCGGGCGCAGTACCTTGGTGTGGTTTTGGAAGTGCTCCCCAATTAGACATCTTCGGCAAGGGGTCACCACAAGCAATGTGTCTCAATCCTGCAGCTTCATTTTCTCTAAGTCGAGATATTTCCTCGGAGTCTCTTCCCAAGGGATCTGCAACTTGGCCCGAGGAGAAGCTTCCTACTTCAAGCCCCAAGGCTAAAATTTCAACAATGCATAAATCCGCATACAAGTTCTTGAAATCTTCTTGCAAGTGCACATCCAGTTGTCACGCATGGGATCTGGTTATTTTGACAGCCGGCTGGGATGGCCGGATAAAATCATTCCACAATTTCGGGTTGCCAGTACTAGCTTAA 2151 0.4361 MGSFSEDEECPFFDAISDDTTDTTEANSSPKDVFLNEFGYQVWIRSPPSVHERRNNFMKWMGLSKEQVAVENSVDVDVREGEVDRMKDSSGSVTRSSSFKEEFCSNQPSVSSQSRMDSSDEFNLVENMQCRDGKSESGARWNLDPLGLYRERNDGGRGAGSDHRVVAEECKDSEYFLCVSANFQHEKICKESEDRDDFKQRSKRNNRGWFKRFGSISCMIDRLGESDSSRLDGSCVFLGSNRIRKVKVQRFRKHTKELSALYMGQDIQAHRGSILTMKFSPDGRFLASAGEDGIVRLWKVVEDEGCNEVDIPEVDPSCIYFTVNNLSELTPLSLEKEKLCKVKGLNKTSDSACIVFPPKIFRLLDKPLHEFHGHEGEILDLSWSNNNCLLSSSVDKTVRLWQVGHDFCLKVFPHSNYVTCIQFNPVNDNYFISGSIDGKVRIWEVPDCHVVDWTDIREIVTAVCYRPNGQGGIIGSMTGNCRFYTLSENHLQLDSQLCLLGKKKLHCRGITGFQFLPQDSNKVMVTCADSKVRILDGLNVVSKYEGLSAAGQMSASVTPDGKHILSTCKDSNVYLWNVIDSKSSSTKAKKIKSCERFFSNASGAVPWCGFGSAPQLDIFGKGSPQAMCLNPAASFSLSRDISSESLPKGSATWPEEKLPTSSPKAKISTMHKSAYKFLKSSCKCTSSCHAWDLVILTAGWDGRIKSFHNFGLPVLA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 554 586 IPR001680 GO:0005515
Stsc151313g00003 716 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Stsc151313g00003 716 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Stsc151313g00003 716 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 445 IPR001680 GO:0005515
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 445 - -
Stsc151313g00003 716 SUPERFAMILY WD40 repeat-like 266 706 IPR036322 GO:0005515
Stsc151313g00003 716 Pfam WD domain, G-beta repeat 366 401 IPR001680 GO:0005515
Stsc151313g00003 716 Pfam WD domain, G-beta repeat 268 299 IPR001680 GO:0005515
Stsc151313g00003 716 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 403 - -
Stsc151313g00003 716 Gene3D - 496 628 IPR015943 GO:0005515
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 403 IPR001680 GO:0005515
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 300 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 260 299 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 496 536 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 405 444 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 446 485 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 660 708 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 364 402 IPR001680 GO:0005515
Stsc151313g00003 716 SMART WD40_4 537 577 IPR001680 GO:0005515
Stsc151313g00003 716 PANTHER WD REPEAT DOMAIN 44 6 713 IPR040324 -
Stsc151313g00003 716 Gene3D - 232 495 IPR015943 GO:0005515
Stsc151313g00003 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151313g00003 Stsc-Chr151313 7069 11547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151313g00003 363 581 U-box Gene Family AT2G33340 24.370 9.80e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151313g00003 - - cam:101515234 887.486