Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151310g00011 ATGGCATTGGACCCAGATATTGAAGAAAAGTATGTACACAACAGCAAGGTCATGCTAGGTTCTGCAATTCTTCTCGTTATACTCATCTTCGTAATCGTTTTATATCGTGCCTATGCTCACTTCTGCGCACGACGCCGCCGCCATCTCTTCCCTCACACTCTTCCGGCGGATACTTCCACTTCCGCCACCGGCGCCCCTGCTTTCAACGACCGACTCGATCCCACCATCCTCAAGTCCCTACCAACCTTCACTTTCTCCTCCGCGGCGCACCGCCCCCTCCAAGACTGCGCCGTCTGCCTCTCCGAGTTTGAAGACGGCGACAAGGGCCGTGTGCTGCCGAATTGCAACCACGCTTTCCACTGCCAATGCATCGACGCGTGGTTCGCATCTCACTCCAACTGCCCACTCTGCCGGTCACCGGTTACCGCACCGGTTGAAGCGTGCTCAATTCCGGTTTCGGTTGAAGTGGAAGCTGGTGGTTGTTCGTCGCTTCCTGCGCCGGTGATGTGCCCTAGAAAGCCGTTAAATGTGGTCCTGGACATTCCGGAAGAGGAGCGAGGCTTGGATCATCGGATTCTTTCTTTGAAGAGGTTTTGCAGCGTGTAG 606 0.5528 MALDPDIEEKYVHNSKVMLGSAILLVILIFVIVLYRAYAHFCARRRRHLFPHTLPADTSTSATGAPAFNDRLDPTILKSLPTFTFSSAAHRPLQDCAVCLSEFEDGDKGRVLPNCNHAFHCQCIDAWFASHSNCPLCRSPVTAPVEACSIPVSVEVEAGGCSSLPAPVMCPRKPLNVVLDIPEEERGLDHRILSLKRFCSV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151310g00011 201 Pfam Ring finger domain 95 138 IPR001841 -
Stsc151310g00011 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 144 IPR013083 -
Stsc151310g00011 201 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 142 IPR044675 -
Stsc151310g00011 201 SMART ring_2 96 137 IPR001841 -
Stsc151310g00011 201 SUPERFAMILY RING/U-box 76 145 - -
Stsc151310g00011 201 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Stsc151310g00011 201 CDD RING-H2_EL5-like 95 138 - -
Stsc151310g00011 201 FunFam E3 ubiquitin-protein ligase ATL6 61 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151310g00011 Stsc-Chr151310 50306 50911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151310g00011 9 143 Rapid Response to Elicitors AT3G16720 43.151 1.12e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151310g00011 - - gmx:102665377 231.491