Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151310g00009 ATGTCGATGACGATGTTTCTCATTCTTCTTCTCCTTCCTTTATTAGTCCATGGAGACACTCCTCCCAACACACCCACCTCCCCTGAAACCCTATGCAAATCCACTCCAGACCCTTCTTATTGCAAATCCGTTCTACCTTCTCGAAACGGCACCGTTTATGATTACGGAAGATTCTCCGTCAACAAGTCTCTGTCACAGGCACGCAAGTTCCTAAACTTGCTTGACCACTACCTCCGCCGCACCTCCACCCTCTCACCTGCCGCCATCCGCGCACTCCAAGACTGCAAGACGCTCGGGGAGATCAACTTGGATTTCCTCTCCACCTCATTCCAGACCGTCAACAACACAACCAGGTTTCTTCCTAGTTTAGAAGCCGATGATGTCCAAACATTGCTGAGTGCCATTCTCACCAACCAGCAAACATGCTTGGATGGTATCAAAGAAACTGCTTCCTCTTGGAGCCTCAAAAATGGCCTCTCCCTCCCCCTCTCCATTGACTCCAAGCTCTATAGCGTGTCTCTCGCCTTGTTTACTAAAGGGTGGGTTCCAAGAATTAAAAACAGAGTGCACCCAGAAACGAAGAAACAAGCTGGTTTCCGCAATGGCCATTTGCCCCTTCAGATGTCTAGCAGGACGAGAGCAATCTACGAGTCCGTGAGTCGGAGGAAGCTCCTCCAGGGAACGGGGGCGGGCGACGAAGTCAAGGTTAGGGACATCGTGACGGTGAGCCAAGATGGAAGCGGAAACTTCACCACCATCAACGATGCTATCAATGCAGCTCCTAACAAATCTGCCTCTGCTACAGATGGATACTTCCTTATCTATGTTACCGCCGGTGTGTATGAGGAGAACGTATCCATTGATAGGAAAAAGACATACTTGATGATGATCGGCGATGGTATCAACAAGACCATTATCACAGGCAACCGTAGTGTTGTTGATGGTTCCACAACCTTCAGCTCTGCAACCTTTGCTGTAGTTGGGGAAGGATTCGTGGGTGTGAATATGACATTTCGAAACACAGCTGGGCCTGAGAAGCACCAAGCGGTGGCGGTTAGAAACGGAGCAGATTTCTCCACATTCTACGGTTGCAGCTTCGAAGGTTACCAAGACACACTATATGTACACACAATGAGACAATTTTACAGAGAATGTGACATTTATGGTACGGTAGATTTCATATTTGGGAACGCCAAGGTTGTGTTCCAGAGCTGCAACCTATACCCTCGGCTTCCCATGAAAGGACAATTCAATGCTATAACCGCACAAGGCCGAACGGACCCTAACCAGGACACAGGAATCTCCATCCACAACTGTACCATTAGAGCCGCGGATGACTTGGCGGCGGCGGGAAGGGGCGCTGCGGCCACGTATTTGGGGAGGCCATGGAAGGAATATTCGAGAACGGTGTACATGCAAACAATGATGGATGGTGTGGTGGATGGTGCAGGGTGGCGTGCATGGGACAGAGATTTTGCGTTGAACACTCTCTATTATGCTGAGTTTAATAACAGTGGTGTGGGGGCCACTACTGCTAATAGGGTGACGTGGCAGGGTTACCACGTGATTAACACAACGGATGCTGCTAACTTTACTGTCTCCAATTTCTTGCTTGGAGATGATTGGCTGCCCAAGACTGGAGTGGCTTACTCCAATGCCTTTATTTAG 1668 0.494 MSMTMFLILLLLPLLVHGDTPPNTPTSPETLCKSTPDPSYCKSVLPSRNGTVYDYGRFSVNKSLSQARKFLNLLDHYLRRTSTLSPAAIRALQDCKTLGEINLDFLSTSFQTVNNTTRFLPSLEADDVQTLLSAILTNQQTCLDGIKETASSWSLKNGLSLPLSIDSKLYSVSLALFTKGWVPRIKNRVHPETKKQAGFRNGHLPLQMSSRTRAIYESVSRRKLLQGTGAGDEVKVRDIVTVSQDGSGNFTTINDAINAAPNKSASATDGYFLIYVTAGVYEENVSIDRKKTYLMMIGDGINKTIITGNRSVVDGSTTFSSATFAVVGEGFVGVNMTFRNTAGPEKHQAVAVRNGADFSTFYGCSFEGYQDTLYVHTMRQFYRECDIYGTVDFIFGNAKVVFQSCNLYPRLPMKGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLAAAGRGAAATYLGRPWKEYSRTVYMQTMMDGVVDGAGWRAWDRDFALNTLYYAEFNNSGVGATTANRVTWQGYHVINTTDAANFTVSNFLLGDDWLPKTGVAYSNAFI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151310g00009 555 FunFam Pectinesterase 233 554 - -
Stsc151310g00009 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Stsc151310g00009 555 Gene3D - 233 554 IPR012334 -
Stsc151310g00009 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Stsc151310g00009 555 SUPERFAMILY Pectin lyase-like 238 551 IPR011050 -
Stsc151310g00009 555 PANTHER PECTINESTERASE 15 544 - -
Stsc151310g00009 555 SMART PMEI_2 23 176 IPR006501 GO:0004857
Stsc151310g00009 555 Pfam Plant invertase/pectin methylesterase inhibitor 29 176 IPR006501 GO:0004857
Stsc151310g00009 555 Pfam Pectinesterase 240 540 IPR000070 GO:0030599|GO:0042545
Stsc151310g00009 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Stsc151310g00009 555 FunFam Pectinesterase 29 179 - -
Stsc151310g00009 555 CDD PMEI-like_3 30 181 - -
Stsc151310g00009 555 NCBIfam pectinesterase inhibitor domain 2 151 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151310g00009 Stsc-Chr151310 45505 47540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151310g00009 1 550 Carbohydrate Esterase AT4G02330 62.172 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151310g00009 K01051 - gmx:100800971 879.011