Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151310g00008 ATGGACCCTTCTTACTGCAAAACAGTGCTTGCTAATCAGCACGGCAGTATCTATGACTATTGCCGCGTTTCTGTTAGAAAGTCATTATCCCAATCTAGAAAGTTCTTGAATGCAGTCAACTCATATCTTCAAAAAGGTCCCAACTCTTACTCTCAACTCACAATCCGCGCTCTCCAAGATTGCAAATTCCTCGCCGAACAAAATTTCGAATTCTTATCAAACACCCTTGACACGGTTGACAAAGCCGGTGATGTTCTTCCTACCGGTGAAGCCGATGATTATCACACACTCCTCAGTGCTGTTCTGACAAACCAACAAACATGTCTTGGTGGATTGCTAACCACAGCTTCTGATCAGAGAGTCAAACATGAACTTTCCTCTTTGCTCTCAGAGGACACAAAGCTTAACAGTGTCTCTCTTGCTATGTTCGTTGATGCTTGGATCCCTCAGGAGGAAACTACCTCGTGGGAAGAACAACCCCATGGAAGAAAGCTACTAAGCTTGGATGGCATGGAAGATGTGCAGGTGAAAGATTTTGTGGTTGTTAGTAAGGATGGAAGTGGAAACTTCACCACTATCAATGAAGCTATAAAAGCTGCACCCAATAACTCTGTTTCTAGCGATGGCTATTTCCTCATCTTCATCAACGAAGGTGTGTATGAGGAGTATGTATCTATAGACAAGAAGAAGAAGTTCTTGATGCTGATTGGAGATGGAATCAATCGTACAGTTATCACTGGAGATCACAATGTTGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTGGCACAAGGATTTGTAGCTGTCAACATAACATTCCGCAACACTGCAGGACCAAGCAAGCACCAAGCAGTGGCAGTGAGAAATGGAGCAGATTTGTCCACCTTCTATAGCTGCAGCTTTGAAGGTTTTCAAGACACATTGTACACACATTCCATGAGGCAATTCTACAGAGAATGTGACATTTATGGAACAGTTGACTTTATATTTGGGAATGCAGCGGTTGTTTTCCAAAACTGCAACTTGTATCCCCGCCTTCCCATGACTGGACAATTCAATGCCATCACCGCACAAGGCAGAACCGATCCGAACCAGAACACTGGTACTTCCATACAGAGCGCAACCATTAAAGCCGCGGACGATCTGGCTCCGGTGGTTGGGAGTGTGTTAACCTACCTTGGGAGGCCGTGGAAGCAGTATTCAAGGACAGTTTACATTGAATGTTTTATGGATAGTTTGATAACTCCAGTTGGATGGAGTAAATGGGATGGAGATTTTGCACTAAGCACATTGTACTATGCTGAGTACAATAACATGGGGCCTGGTTCAAGCACTGCTGCAAGAGTGAATTGGCCTGGCTATCATATTATCAATGATGTTGATGCAGCTAATTTTACTGTCTCTAAATTCTTGGATGGGGATGCTTGGCTGCCTCCAACTAACGTTCCATTTCAGGCATCATTATAA 1479 0.4368 MDPSYCKTVLANQHGSIYDYCRVSVRKSLSQSRKFLNAVNSYLQKGPNSYSQLTIRALQDCKFLAEQNFEFLSNTLDTVDKAGDVLPTGEADDYHTLLSAVLTNQQTCLGGLLTTASDQRVKHELSSLLSEDTKLNSVSLAMFVDAWIPQEETTSWEEQPHGRKLLSLDGMEDVQVKDFVVVSKDGSGNFTTINEAIKAAPNNSVSSDGYFLIFINEGVYEEYVSIDKKKKFLMLIGDGINRTVITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGFQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMTGQFNAITAQGRTDPNQNTGTSIQSATIKAADDLAPVVGSVLTYLGRPWKQYSRTVYIECFMDSLITPVGWSKWDGDFALSTLYYAEYNNMGPGSSTAARVNWPGYHIINDVDAANFTVSKFLDGDAWLPPTNVPFQASL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151310g00008 492 SMART PMEI_2 1 142 IPR006501 GO:0004857
Stsc151310g00008 492 SUPERFAMILY Pectin lyase-like 177 489 IPR011050 -
Stsc151310g00008 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 144 IPR035513 -
Stsc151310g00008 492 PANTHER PECTINESTERASE 5 484 - -
Stsc151310g00008 492 ProSitePatterns Pectinesterase signature 2. 326 335 IPR033131 -
Stsc151310g00008 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 143 IPR035513 -
Stsc151310g00008 492 Pfam Pectinesterase 180 478 IPR000070 GO:0030599|GO:0042545
Stsc151310g00008 492 Pfam Plant invertase/pectin methylesterase inhibitor 2 142 IPR006501 GO:0004857
Stsc151310g00008 492 CDD PMEI-like_3 1 143 - -
Stsc151310g00008 492 FunFam Pectinesterase 173 492 - -
Stsc151310g00008 492 Gene3D - 173 492 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151310g00008 Stsc-Chr151310 39643 41344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151310g00008 2 492 Carbohydrate Esterase AT1G02810 55.166 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151310g00008 K01051 - gmx:100792847 764.222