Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151310g00007 ATGTATAACCTCACCAGAACAACACCACCACTATTGCTTCTGTCTCTTTTCCTTCTCAACTTTAACTTGATCACAAAAGCAACACATGAAAAAGAAGCACACTCAGCATGCGAGGGAACACTCTACCCAGACCTCTGCGTCTCAACCCTCGCCACATTCCCCGATCTCGCATCCAAATCCCTCCCACAAACCATATGCTCCCTCCTCAACCACACCGTCGGCGAGGTCACCTCATCTTCCTACAACTGCACCGGACTCAGAAAGGGTCTCCCCAACCTCACCACCCTCGAGAAGCGTGCCCTCGACGACTGCATCACCTTGTTCGAAGACACCCGCACGGAGCTTGGCACCACCATCTCCGACCTCAACCAGACCACAATACCCAGCAGGCGCTACCAGGACTCGCAGACTCTTCTGAGCGGAGCCATGACAAACTTGTACACGTGCCTCGATGGCTTCGCTTACTGCAAGAAGAGTCACGTGAGGGAAAGGTACCTGCAGGACAAGCTGTTTCAGATTTCTCGTCATGTTAGTAACTCCCTTGCCATGCTCAAGAAGGTTCCCGGAGTGAAGAAGCCTTCGGAATCGGAGGCCTTCCCGGAATATGGGAAGATGAAGGGACATTTTCCAACGTGGGTTAGTAACAAAGAGCGGAAGCTGCTTCAAGCTTCTGTGAATGAGACTAAGTTTAATCTTGTTGTGGCCCAAGATGGAAGTGGAGATTTCAAGACTATAGGGGAAGCACTGGCTGCTGCTCCCAACTCAAGCACAACCAGGTTTGTGATACACATAAAAGCTGGAGCGTATTTTGAAAACGTGGAGGTGATTAAGAAGAAGACGAATTTGATGTTGGTGGGTGATGGAATTGGAAACACTGTGGTCAAGGCCAGTCGGAATGTGGTCGATGGCTGGACCACTTTCCAGTCCGCTACTTTTGCTGTAGTAGCAGACGGATTCATAGCGAAAGGAATAACATTTGAGAACTCCGCTGGGCCCAGCAAGCACCAGGCGGTGGCCGTAAGAAACGGTGCAGATCTCTCTGTATTCTACCAATGCAGCTTCGTCGCATACCAAGACACCCTCTACGTCCATTCCCTACGCCAATTCTACCGTGAATGCGACGTATACGGCACCGTAGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAAAACTGCAACCTCTACGCTCGCAAGCCCGATCCAAACCAAAAGAACCTCTTCACTGCACAGGGCAGAGAAGACCCTAACCAGAACACCGGTATATCAATCTTGAACTGCAAGGTTACTGCCGCATCGGATCTGATCCCCGTCAAGTCTACCTTCAAGACTTACCTTGGCAGGCCTTGGAAGATGTATTCAAGAACGGTTTTCTTGAAATCATTCATTGACGATTTGGTTGACCCTGCGGGTTGGTTGGAGTGGAATGGCACCTTTGCTTTGGACACATTGTATTATGGTGAGTACCAAAATAGGGGTCCTGGTTCCAACACTAGTGCTAGGGTTACGTGGCCTGGTTATAGAGTCATAACTAACTCCACTGAGGCAAGTCAATTCACGGTTAAGCAGTTTATAATGGGCGATGTCTGGCTTAATTCCACCGGTGTTCCCTTCTTCCCTGGTTTGAGTTGA 1632 0.5 MYNLTRTTPPLLLLSLFLLNFNLITKATHEKEAHSACEGTLYPDLCVSTLATFPDLASKSLPQTICSLLNHTVGEVTSSSYNCTGLRKGLPNLTTLEKRALDDCITLFEDTRTELGTTISDLNQTTIPSRRYQDSQTLLSGAMTNLYTCLDGFAYCKKSHVRERYLQDKLFQISRHVSNSLAMLKKVPGVKKPSESEAFPEYGKMKGHFPTWVSNKERKLLQASVNETKFNLVVAQDGSGDFKTIGEALAAAPNSSTTRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGNTVVKASRNVVDGWTTFQSATFAVVADGFIAKGITFENSAGPSKHQAVAVRNGADLSVFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVTAASDLIPVKSTFKTYLGRPWKMYSRTVFLKSFIDDLVDPAGWLEWNGTFALDTLYYGEYQNRGPGSNTSARVTWPGYRVITNSTEASQFTVKQFIMGDVWLNSTGVPFFPGLS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151310g00007 543 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Stsc151310g00007 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 187 IPR035513 -
Stsc151310g00007 543 SMART PMEI_2 28 183 IPR006501 GO:0004857
Stsc151310g00007 543 Pfam Plant invertase/pectin methylesterase inhibitor 34 183 IPR006501 GO:0004857
Stsc151310g00007 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 187 IPR035513 -
Stsc151310g00007 543 NCBIfam pectinesterase inhibitor domain 12 182 IPR006501 GO:0004857
Stsc151310g00007 543 SUPERFAMILY Pectin lyase-like 229 541 IPR011050 -
Stsc151310g00007 543 Gene3D - 225 542 IPR012334 -
Stsc151310g00007 543 PANTHER PECTINESTERASE 22 532 - -
Stsc151310g00007 543 FunFam Pectinesterase 225 542 - -
Stsc151310g00007 543 Pfam Pectinesterase 231 528 IPR000070 GO:0030599|GO:0042545
Stsc151310g00007 543 CDD PMEI-like_3 35 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151310g00007 Stsc-Chr151310 32144 36119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151310g00007 57 538 Carbohydrate Esterase AT4G02320 55.172 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151310g00007 K01051 - gmx:100802881 824.313