Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151306g00002 ATGGACCCTAGTGGATCATACCCGGTGTCAGGAGTCGGAGCAACCCAAATGAAAATGACGATTCGCCCCTCCCACTCCCACCACCACTCCGAGACCACCAACACCGACCGCGCACTCGACTGCAACCTCACCTCCCTCTGCGACCACATCCAATCCGAAGGCTTCAGCTCCGGCGCCTTCTCCGACATCCTCCTCCACGCCCTCGGCTCCACCTTCCGCCTCCACCGCCTCCTCCTCTCTCGCAGCTCCTATTTCCGGAACATGCTTCATGGACCTTGGAAGGAAGCTTCTGCACCGGTTGTGACTTTGCACGTCGACGATAAAAACGTTAACGAAGAAGCCATTACTATGGCTTTGGCTTATCTCTATGGCCAGCACCCTAAGCTTAACGATAACAATGCTTTTCGTGTTCTCGCTGCTGCTTCCTTCCTTGACCTTCAGGATTTGTGTGCAATATGTACAGACTTCATTATATCGGAGCTTTGGACTTCTAATTTCTTGGCTTACCAGGTGTTTGCCGAGAACCAAGACTATGGCATCCACGGGGAGCGTGTAAGAAATGCTTGTTGGGGCTACCTATGTCAAAGTGGTGGCATAGAATTAAAAGAGGTACTTCCTAAACTTTCATCTCAAACATTGCATGCGTTACTGACCAGTGATGAACTATGGATACCAAGTGAAGAAAAAAGGTTTGAGTTGGCTTTGTATGTGTTCCTCGCAAAAAGTGCTCAGTGGAAGGCCAAACATCCTGAACAAGGAAGTTCCAATTCTGAGTCTGGAACTGATATCCATTCCGATTCTGATCACTCTAAGGGGAAGAGTGTAGCTGACTGCTTCACTGATAAGAGATTGGAAACTGATCTAGAGCAAATGAGTCTTAAAAGTAATCTAAATGATCCTAATGACCGTAGTCTTATAGTTGAGCCTCCAGACTTCAACAATGCAGCTTCTAATTCCAATCAACAAAGTGAAGAAGCTTCATATTCCAGCTCATCAATCCTGAAACCAACATACTCTTGCAACATGGAAGGGCCTTCATCAATGGGTGATTCAANNNNNNNNNNTACAGATGGCAGCAGAACATCATGTTCCTATGTTGAGATGCCTGTTGTTGCTGGAGTAAATGGAGTGGCTATGGAAGGGCCTTCTGAGGAAGGATCTTGCTACCATATGGATAACAATAGTTGGATTGTTAGGGATCAATCTAGAAACCGTTTTTCATCAAATTCTTCTTCTAGCGGGGTATCATCCAGTGATTGGGGAAGATATGGAGCACCATTTTTTTCATGGGGTGGAAGAGTTGTTGGCAAAAGACGGCTTGAAGCTCACTCCAAAAGAAACTATGAAGATAATGGGGATGAATATGATGCATTTCTTAACATATTTGAAGGGGGCTCTCTCTTGTACTGCAATATGTCTTTTGAGGCTCTTTTGAATGTCAGAAAGCAACTTGAAGAGTTAGGTTTCCCTTGTAAAGCTGTGAATGATGGCCTTTGGCTTCAGATGCTTCTAAGTCAGAGGGTGCAAGAAATTGCTGCTGATACCTGTAAGTCTTGTTCCCTTATGAGTATGGCTTGCACTTGCCGGCAACCATTCACATTTTCACATGGGGCTAATTCTACTGGGTTTTACATGCAAGAACATAACCAGAATTATATGCCTGGGAATATGGGCAATATATATGTTGCTGAGCCTTCTCCAGGTGAAGGAAATGGCATCTTTAGACCTGTACGAGTACATGTTAGAGGGGCTATAGATGGCCTTGCAGGTATTGGTCGTGGAACTACCTTTGTTCCAGCAGCTGCTTCTCCTCCTACACGTTTTGTCTTTTCTCGTGTACCATTTGGTGTTCGGAACAGAAACTACCAGCAATCTGCGGCCAATGATGATTCAGAGATGCGAACTGATCACAATGGTGACCTGTCTGGAGATGGATTGACAGCATTGGTTGGATTAAGTCAAGGTGGTGGTAGTGGAACAAATGTACATGGAGAACTTTCTCAAAGGGGATATGAAATGGACATGCAAGGCAGAATGTCTGGAACTGCTGGAGGTCCAAGTACTGGTGGTATTCCTATGCAGATGTTAGAGACATCAGAACATAGCGGTGGAGTAGAATGGGAGAATTCCAATAATTCATCTATATCATTGGATTTGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGGGTACAATTTGAGGATGTGCACAGACTTGGTGATGGTCAGGTTAAGCATTCTCCAGAAATGTTCTATGCTGGTTCTTTATGGAAGGTCAGTGTACAGGCTTTTAATGATGAGGACCCTCAGGGAAGACGTACGCTGGGGTTGTTTCTTCATCGTCGGAAGGCAGAGATAACTGATATACACAGAAAGGTGCACATGTATGTGGATTCTCGTGAAAAGGTGACTGCTCGCTATCAGTTGATTTGTCCATCCAAGAGGGAGGTGATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTCTTATTTGATGAGCTTGCTGATCTTCTCCAAAATGGAGCCCTAAGGGTCATTGCTGTGGTGCAGCTTGTTTGA 2607 0.4503 MDPSGSYPVSGVGATQMKMTIRPSHSHHHSETTNTDRALDCNLTSLCDHIQSEGFSSGAFSDILLHALGSTFRLHRLLLSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNEEAITMALAYLYGQHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRNACWGYLCQSGGIELKEVLPKLSSQTLHALLTSDELWIPSEEKRFELALYVFLAKSAQWKAKHPEQGSSNSESGTDIHSDSDHSKGKSVADCFTDKRLETDLEQMSLKSNLNDPNDRSLIVEPPDFNNAASNSNQQSEEASYSSSSILKPTYSCNMEGPSSMGDSXXXXTDGSRTSCSYVEMPVVAGVNGVAMEGPSEEGSCYHMDNNSWIVRDQSRNRFSSNSSSSGVSSSDWGRYGAPFFSWGGRVVGKRRLEAHSKRNYEDNGDEYDAFLNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKSCSLMSMACTCRQPFTFSHGANSTGFYMQEHNQNYMPGNMGNIYVAEPSPGEGNGIFRPVRVHVRGAIDGLAGIGRGTTFVPAAASPPTRFVFSRVPFGVRNRNYQQSAANDDSEMRTDHNGDLSGDGLTALVGLSQGGGSGTNVHGELSQRGYEMDMQGRMSGTAGGPSTGGIPMQMLETSEHSGGVEWENSNNSSISLDLKTPLSHFPPFRFGVQFEDVHRLGDGQVKHSPEMFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151306g00002 868 Gene3D Potassium Channel Kv1.1; Chain A 28 195 IPR011333 -
Stsc151306g00002 868 SMART BTB_4 61 161 IPR000210 GO:0005515
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 1 33 - -
Stsc151306g00002 868 Pfam BTB/POZ domain 55 159 IPR000210 GO:0005515
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 676 695 - -
Stsc151306g00002 868 ProSiteProfiles BTB domain profile. 61 131 IPR000210 GO:0005515
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 311 360 - -
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 626 665 - -
Stsc151306g00002 868 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 15 868 - -
Stsc151306g00002 868 SUPERFAMILY POZ domain 53 159 IPR011333 -
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 290 360 - -
Stsc151306g00002 868 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151306g00002 Stsc-Chr151306 16496 21668 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc151306g00002 BTB 1.8e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151306g00002 - - gmx:100806711 1307.74