Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151306g00001 ATGGGAATTCTGTCCGCTGCTCCTCTCTTGGTGACGGTTCTTACCTTCGGAACCGCGACTTTTATTGGGATTCCCCTTAATGCTGGGACTGTTTTTACAATAACTTCAGTGATCAAGATTCTGCAGGAGCCGGTTAGGACGTTCCCGCAGGCTCTTATCTTGATTTCTCAGGCTCTGGTATCTCTAGGGAGGTTGGATGAGTTCATGATGAGTAAGGAAAGGGATGAGAATGCAGTGCAGAGAGATGATAAATGTGACAGTGACATAGCAGTGGAGATGAAAGATGCCAAATTCTCTTGGGATGATGAGGAAGGGAATGAGGCTCTGAAGGTTGAAGAGCTGGAGATTAGGAAAGGGGACCATGCTGCAGTTGTTGGAACTGTTGGCTCAGGAAAGTCTTCATTGTTGGCTTCTATTTTGGGGGAAATGTACAAGATATCAGGAAAGGTCACAGTTTGTGGGACAGTTGCATATGTAGCACAAACATCATGGATTCAGAATGCAACCATACAAGAAAACATATTATTTGGCTTACCAATGAACCAGCAGAAATACAAGGAAGCCATACGAGTGTGCTGCCTGGAAAAGGATCTAGAAATGATGGAACATGGAGACCAGACTGAGATAGGAGAAAGGGGTATTAACCTCAGTGGCGGTCAGAAGCAACGCGTGCAACTCGCTAGAGCTGTGTACCAGGATTGTGACATCTATCTCCTTGATGATATATTCAGTGCTGTTGATGCCCAAACAGGATCATTTATTTTCAAGGAATGTGTCATGGGAGCTCTTAGACATAAGACCATTTTACTAGTAACTCACCAAGTTGATTTCCTGCATAATGTTGACTCTATAATGGTGATGCGAGACGGGAGAGTCGTGCAAAGTGGAAAGTATGATGAACTTCTCAAAGCTGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAAAGTGCTATGGAGATCACAGAAACTGGTGATGGTTCTGGCGAGTCTCCAAAGTTGGCTCGCATTCCTTCGAAGGAAAAGGAAAGCGTAGGCGAAAAGCAATCTCAAGATCAATCTAAGTCTGATAAGGGTTCATCAAAGCTCATTGAAGAGGAGGAGAGGGAAACCGGCCAAGTCAATCTCAGAGTATACAAACATTATTTCACTGAAGCATTTGGATGGTGGGGAGTAGCACTCATGCTGGCAATGTCTTTAGCATGGATCATATCCTTCTTGGCTGGTGACTACTGGCTAGCATTTGCAACTTCAGAATCTTCTTCCGTTCCCTCTTTCACTTTCATTATTGTCTATGCTTCCATAGCAGTAGTTTCATGTATGGTAGTGATGGTGAGGTCATTCTTATTTACATATTGGGGTCTGAAGACATCTCAAAGCTTCTTCATTGGTATGCTTGATAGCATTCTGCATGCACCAATGTCATTCTTTGACACCACTCCATCTGGCAGAATCCTGAGTCGTGTATCTACTGATCTACTTTGGGTTGATATATCAATTCCATTGTTAGTAAGCTTTGTGATGGTGTCATACTTCTCATTAATCAGCATCATCTTTGTCACATGCCAAAATGCTTGGGAGACTGTCTTCCTCTTAATTCCATTGTTTTGGCTCAATAATTGGTACCGGAAATACTACATTGCATCTTCTCGGGAACTGACTCGCCTTGATTCTATCACGAAAGCTCCGGTTATCCATCACTTTTCAGAGACCATTTCTGGTGTTATGACGATCCGTGGCTTCAGGAAGCAGGGTGAATTTTGTCAGGAGAATCTTGACAGGGTAAATGCAAGTCTCAGAATGGATTTCCACAACAATGGAGCGAACGAATGGCTTGGTTTCCGCTTGGACTTTTCAGGAGTGGTTTTCCTTTGCATTGCCACTGTCTTCATGATCTTTCTTCCAAGTGCTATTATTAGGCCAGAATATGTTGGTTTATCTCTATCCTATGGCCTGGCTCTCAGTAGTCTCTTATCATTCACCATAAGCATGACTTGTTCTGTTGAGAATAAAATGGTTTCAGTTGAGAGGATAAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGACAATCCCTGATAGGACTCCTCCTCCAGATTGGCCTAGTCATGGCGACATCGAGTTAGATAACTTGCAGGTTAGGTATAGGTCAAATACTCCTCTAATTCTCAAGGGAGTATCACTCACAATTCAAGGGGGAGAGAAGATTGGTGTTGTTGGCCGCACAGGGAGTGGAAAATCAACCCTCATCCAGGTGTTATTTAGGCTGATTGAGCCTTCAGCTGGAAAAATAATCATTGATGGAATCAACATTTGCAATGTTGGGCTTCATGATCTGAGGTCTAGATTTGGAATCATTCCACAGGAGCCAGTTCTCTTTCAAGGAACTGTCAGAAGCAATGTTGATCCGCTTGGAATGTATTCAGAAGAAGAAATTTGGAAGAGCCTCGAGCGCTGCCAATTGAAAGATGTTGTGGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTTGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTACTTTGCTTGGGAAGGATCATGCTCAAACGCAGCAGGATACTATTCATGGATGAGGCAACAGCATCCGTTGATTCACAAACCGATGCTGTAATACAGAGGATCATCCGTGAGGACTTCGCGGATCGTACAATTATCAGTATTGCTCACAGAATACCAACAGTCATGGATTGTGACAGGGTTTTGGTCATTGATGCAGGTTATGCAAGGGAATTTGACAAACCATCACGTTTGCTAGAAAGGCCAACACTTTTTGGGGCATTGGTTAAGGAATATTCCAATAGGGCATCTGAAGTGTAA 2850 0.4368 MGILSAAPLLVTVLTFGTATFIGIPLNAGTVFTITSVIKILQEPVRTFPQALILISQALVSLGRLDEFMMSKERDENAVQRDDKCDSDIAVEMKDAKFSWDDEEGNEALKVEELEIRKGDHAAVVGTVGSGKSSLLASILGEMYKISGKVTVCGTVAYVAQTSWIQNATIQENILFGLPMNQQKYKEAIRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDIFSAVDAQTGSFIFKECVMGALRHKTILLVTHQVDFLHNVDSIMVMRDGRVVQSGKYDELLKAGLDFGALVAAHESAMEITETGDGSGESPKLARIPSKEKESVGEKQSQDQSKSDKGSSKLIEEEERETGQVNLRVYKHYFTEAFGWWGVALMLAMSLAWIISFLAGDYWLAFATSESSSVPSFTFIIVYASIAVVSCMVVMVRSFLFTYWGLKTSQSFFIGMLDSILHAPMSFFDTTPSGRILSRVSTDLLWVDISIPLLVSFVMVSYFSLISIIFVTCQNAWETVFLLIPLFWLNNWYRKYYIASSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQGEFCQENLDRVNASLRMDFHNNGANEWLGFRLDFSGVVFLCIATVFMIFLPSAIIRPEYVGLSLSYGLALSSLLSFTISMTCSVENKMVSVERIKQFTNLPSEAPWTIPDRTPPPDWPSHGDIELDNLQVRYRSNTPLILKGVSLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICNVGLHDLRSRFGIIPQEPVLFQGTVRSNVDPLGMYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSRILFMDEATASVDSQTDAVIQRIIREDFADRTIISIAHRIPTVMDCDRVLVIDAGYAREFDKPSRLLERPTLFGALVKEYSNRASEV 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151306g00001 949 Pfam ABC transporter 113 241 IPR003439 GO:0005524
Stsc151306g00001 949 Gene3D - 86 317 IPR027417 -
Stsc151306g00001 949 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 944 - -
Stsc151306g00001 949 CDD ABCC_MRP_domain1 91 291 - -
Stsc151306g00001 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 940 IPR027417 -
Stsc151306g00001 949 Gene3D ABC transporter type 1, transmembrane domain 354 688 IPR036640 GO:0005524|GO:0016020
Stsc151306g00001 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 310 IPR027417 -
Stsc151306g00001 949 FunFam ABC transporter C family member 4 74 332 - -
Stsc151306g00001 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 91 314 IPR003439 GO:0005524
Stsc151306g00001 949 Pfam ABC transporter 724 872 IPR003439 GO:0005524
Stsc151306g00001 949 CDD ABC_6TM_ABCC_D2 388 682 IPR044726 GO:0140359
Stsc151306g00001 949 Gene3D - 692 939 IPR027417 -
Stsc151306g00001 949 MobiDBLite consensus disorder prediction 335 367 - -
Stsc151306g00001 949 Gene3D ABC transporter type 1, transmembrane domain 1 76 IPR036640 GO:0005524|GO:0016020
Stsc151306g00001 949 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524|GO:0016887
Stsc151306g00001 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 707 941 IPR003439 GO:0005524
Stsc151306g00001 949 Pfam ABC transporter transmembrane region 411 634 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151306g00001 949 CDD ABCC_MRP_domain2 705 925 - -
Stsc151306g00001 949 MobiDBLite consensus disorder prediction 321 367 - -
Stsc151306g00001 949 SUPERFAMILY ABC transporter transmembrane region 389 687 IPR036640 GO:0005524|GO:0016020
Stsc151306g00001 949 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 389 670 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151306g00001 949 SMART AAA_5 118 299 IPR003593 GO:0016887
Stsc151306g00001 949 SMART AAA_5 733 917 IPR003593 GO:0016887
Stsc151306g00001 949 FunFam ABC transporter C family member 5 355 688 - -
Stsc151306g00001 949 FunFam ABC transporter C family member 3 690 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151306g00001 Stsc-Chr151306 6861 12551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151306g00001 705 931 Calmodulin-binding Proteins AT2G36910 30.870 1.58e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151306g00001 - K05665 gmx:100780167 1637.85