Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151304g00006 ATGGCGAAAACATGTGTGGGAATCGATCTCGGTACCACTTACTCATGCGTTGGTGTGTGGCAGGAAGAACACCAAAGAGTGGAGATCATCCACAATGACCAAGGCCATAGAACAACACCTTCTTCTGTTGCTTTCACCAATGACCATCGCTTGATTGGTGATGCCGCTAAGAATCAAGCTGCTTCCAATCCAACTAACACTGTCTTCGATGCCAAAAGGTTGATTGGCAGAAAATATAGTGACCCCATTGTCAAGAATGACATGATGCTGTGGCCATTTAAAGTCATTCCTGGTGAAGATGACAAACCAATGATTTCTGTTACATATAAGGGTCAGGAGAAGCATCTTTCTGCTGAAGAAGTTTCATCCATGATTCTAACTAAAATGCGCCAGATTGCAGAGGCTTATTTGGAAGCTCCTGTCATTAATGCAGTAATCACTGTCCCTGCTTATTTCAGTGACTCTCAACGTACAGGCACAAAAGATGCTGGTGCCATTGCAGGCCTCAATGTCATGAGAATCATTAACGAGCCTACAGCTGCTGCAATTGCATATGGTTTGGACAAGCTAGCTAATTGTTCTGAAGAACGGAATGTTTTCATCTTTGACCTCGGCGGTGGTACTTTTGATGTGTCTCTGCTTACTATTAAAAATAAGGTCTTTGAAGTTAAGGCCACTGCAGGGAATACTCACCTTGGTGGAGAAGACTTTGATAACAGAATGGTGAATTACTTTGTACAAGAGTTCAAAAAGAAGAACAAAGTGGACATTAGTGGGAACCCAAAAGCCTTGAGAAGGTCTTGTATACATGATATTGTCCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGAATTCTTCAGAGGTAAGGATCTTTGCAAGAGTATCAACCCGGACGAAGCTGTTGCTTATGGAGCTGCAGTTCAAGCTGCTTTATTGAGTGAAGATGTCAAGAAAGCACCAGAATTGGTTCTATTAGATGTTACACCATTGTCACTTGGTATAGGATTAATTCGAGACCGAATGAACGTGGTGATTCCTAGAAACACTAGCATTCCTGCTAAGAGGACAAGAGCATACACAGCTAAAGATAACCAAAGCAGTGTTGCTATCCATGTTTATGAGGGTGAGAGGACAAGATCAAGTGATAACAACTTGTTGGGTTGTTTTAGTCTTGATCTTCCTAGTGAATCTTGTCAGCCTCTTTTGTTTGTATGCTTTGATATAGATGCTGATGGGATTCTAAATGTGTCTGCATGGGAAGAAACCAATGGTTGTAGGAATGAAATCAGAATAACCAATGACAAAGAAAGACTTTCGGCCGAGGAGATTCAAAGGTTGATTGAGGAAGCTGACAAGTACAAGGTTGAAGATGCAGAGTTTCTTGAGAAGGCTAATGCAATGAATGCTTTGGAGACTTATGTTTGCAAGATGGTAAAAGCTCTAAGCGATAAAGACATGAGCTCTAAGCTTTGCCCTTTTGACAAGGACGAGATATATTTTGCAATTGACAAGGCTAGAAATTTGCTTGATGGTGATAGCCAGCGGCGAGATACAGATGGGTTTGTGAATTGTCTAAAGGAGGTGAAGGGTATCTTTAAACCCATTATAGCCAAGACTAAATAG 1641 0.4162 MAKTCVGIDLGTTYSCVGVWQEEHQRVEIIHNDQGHRTTPSSVAFTNDHRLIGDAAKNQAASNPTNTVFDAKRLIGRKYSDPIVKNDMMLWPFKVIPGEDDKPMISVTYKGQEKHLSAEEVSSMILTKMRQIAEAYLEAPVINAVITVPAYFSDSQRTGTKDAGAIAGLNVMRIINEPTAAAIAYGLDKLANCSEERNVFIFDLGGGTFDVSLLTIKNKVFEVKATAGNTHLGGEDFDNRMVNYFVQEFKKKNKVDISGNPKALRRSCIHDIVLVGGSSRIPKVQQLLQEFFRGKDLCKSINPDEAVAYGAAVQAALLSEDVKKAPELVLLDVTPLSLGIGLIRDRMNVVIPRNTSIPAKRTRAYTAKDNQSSVAIHVYEGERTRSSDNNLLGCFSLDLPSESCQPLLFVCFDIDADGILNVSAWEETNGCRNEIRITNDKERLSAEEIQRLIEEADKYKVEDAEFLEKANAMNALETYVCKMVKALSDKDMSSKLCPFDKDEIYFAIDKARNLLDGDSQRRDTDGFVNCLKEVKGIFKPIIAKTK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151304g00006 546 SUPERFAMILY Actin-like ATPase domain 195 319 IPR043129 -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 4 17 - -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 34 46 - -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 405 421 - -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 269 285 - -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 301 321 - -
Stsc151304g00006 546 PRINTS 70kDa heat shock protein signature 327 346 - -
Stsc151304g00006 546 Pfam Hsp70 protein 6 266 IPR013126 GO:0005524|GO:0140662
Stsc151304g00006 546 Pfam Hsp70 protein 267 542 IPR013126 GO:0005524|GO:0140662
Stsc151304g00006 546 PANTHER HEAT SHOCK PROTEIN 70KDA 6 266 IPR013126 GO:0005524|GO:0140662
Stsc151304g00006 546 Gene3D - 69 124 - -
Stsc151304g00006 546 Gene3D - 302 316 - -
Stsc151304g00006 546 Gene3D - 190 232 - -
Stsc151304g00006 546 ProSitePatterns Heat shock hsp70 proteins family signature 3. 272 286 IPR018181 -
Stsc151304g00006 546 FunFam Heat shock protein 70 6 196 - -
Stsc151304g00006 546 FunFam heat shock 70 kDa protein-like 69 124 - -
Stsc151304g00006 546 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 325 477 IPR029047 -
Stsc151304g00006 546 Gene3D - 267 301 - -
Stsc151304g00006 546 FunFam Heat shock 70 kDa protein 197 298 - -
Stsc151304g00006 546 Gene3D Actin; Chain A, domain 4 233 266 - -
Stsc151304g00006 546 SUPERFAMILY Actin-like ATPase domain 4 189 IPR043129 -
Stsc151304g00006 546 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 323 472 IPR029047 -
Stsc151304g00006 546 Gene3D - 6 189 - -
Stsc151304g00006 546 ProSitePatterns Heat shock hsp70 proteins family signature 1. 8 15 IPR018181 -
Stsc151304g00006 546 ProSitePatterns Heat shock hsp70 proteins family signature 2. 201 214 IPR018181 -
Stsc151304g00006 546 Gene3D - 473 546 IPR029048 -
Stsc151304g00006 546 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 472 545 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151304g00006 Stsc-Chr151304 22006 24147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151304g00006 5 544 Calmodulin-binding Proteins AT5G02490 51.311 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151304g00006 K03283 - pcad:102982689 540.036